PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147435.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 260aa    MW: 29936.3 Da    PI: 5.2149
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-2166119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fek++++  e++++LAkklgL+ rqV+vWFqNrRa++k
  XP_009147435.1  66 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVSVWFQNRRARWK 119
                     56689************************************************9 PP
2HD-ZIP_I/II128.62.6e-4166157293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl++eqv+lLE+sFe+e+kLeperK++la++Lglqprqv vWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+++++
  XP_009147435.1  66 KKRRLTHEQVHLLEKSFEKENKLEPERKTQLAKKLGLQPRQVSVWFQNRRARWKTKQLERDFNLLKSSYDQLLSNYDSILKDNHLLRSQVTS 157
                     9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-2151123IPR009057Homeodomain-like
PROSITE profilePS5007118.20461121IPR001356Homeobox domain
SMARTSM003896.8E-2064125IPR001356Homeobox domain
CDDcd000868.95E-1966122No hitNo description
PfamPF000463.2E-1866119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-2268127IPR009057Homeodomain-like
PRINTSPR000312.7E-692101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000312.7E-6101117IPR000047Helix-turn-helix motif
PfamPF021831.2E-15121163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESNKFFFNP STSHGNMFFL GNLNPVVQGS MMNMEESSSK RRPFFCSPDD LLYDDVDYYD  60
DQTPDKKRRL THEQVHLLEK SFEKENKLEP ERKTQLAKKL GLQPRQVSVW FQNRRARWKT  120
KQLERDFNLL KSSYDQLLSN YDSILKDNHL LRSQVTSLAG KVQAKEETAP CQVPESNQLD  180
PVNLNRFEPA IKTEDRLSSG SAVLDEDAPH QLRDSCDSYF PTIVPIHHSA EEDNNGSGND  240
TGCFADVFVQ GESFGFWGWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.70450.0leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147435.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147435.10.0PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022831e-120HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A078HJS40.0A0A078HJS4_BRANA; BnaA05g33840D protein
TrEMBLA0A397ZN190.0A0A397ZN19_BRACM; Uncharacterized protein
TrEMBLM4FDE50.0M4FDE5_BRARP; Uncharacterized protein
STRINGBra039116.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-123homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]