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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009147499.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
GRAS |
| Protein Properties |
Length: 454aa MW: 50603.3 Da PI: 6.7521 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009147499.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 415.5 | 4.6e-127 | 53 | 454 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.............. 81
l++lL+++A+++s+++ ++aq++L+ ls ++sp+gd+++Rl++ ft+AL+ r+ s + + + ++s+ + +
XP_009147499.1 53 LRRLLFTAADFISQSNVSAAQNILSILSSNSSPYGDSTERLVHLFTKALSVRIGLSENAATWTANEMASSS---TVFT--Ssvckeqflfrtknn 142
689**************************************************873333332222222222...2222..122456677888888 PP
GRAS 82 .........kl.fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskee 157
l +++++P+++fshltaNqaIl+a+e++ ++Hi+D+disqGlQWp+L+qaLa+R+ +ppslRiTg+g+ + +
XP_009147499.1 143 nnsdlescyYLwLNQLTPFIRFSHLTANQAILDATETNngnGALHILDLDISQGLQWPPLMQALAERSssnpssTPPPSLRITGCGR----DVTV 233
888888765226************************9888799************************97766655699*********....**** PP
GRAS 158 leetgerLakfAeelgvpfefnvlvak..rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
l++tg+rL++fA++lg++f+f++lv +l+ l +++ L+++ gE++aVn+v+ lhr++++++++ ++L+++ksl+P++v+++e+ea
XP_009147499.1 234 LNRTGDRLTRFANSLGLQFQFHTLVIAeeDLAGLllQIRLLALSAvqGESIAVNCVHFLHRFFNDDGDMIG---HFLSAIKSLNPRIVTMAEREA 325
***********************944312443223366666665556**********************99...********************* PP
GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
+h+++sFl+rf+eal++++a+fdslea+lp++s+er ++E++++g ei +vva+e aer++rh+++e W+e++++ GF +vp++++a +qaklll
XP_009147499.1 326 NHGDPSFLNRFSEALDHFMAIFDSLEATLPPNSRERLTLEQRWFGMEILDVVAAEAAERKQRHRRFEVWEEMMKRHGFANVPIGSFAFSQAKLLL 420
*********************************************************************************************** PP
GRAS 342 rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
r ++ s+gy+++ ++sl+lgWk+r L+svS+W+
XP_009147499.1 421 RLHYpSEGYNLQFLNDSLFLGWKNRLLFSVSSWK 454
*********************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MNQKSIFLSF QMLASFKSSS SSSEDATENP PPPPPPPLCL ASSSAATSAA HHLRRLLFTA 60
ADFISQSNVS AAQNILSILS SNSSPYGDST ERLVHLFTKA LSVRIGLSEN AATWTANEMA 120
SSSTVFTSSV CKEQFLFRTK NNNNSDLESC YYLWLNQLTP FIRFSHLTAN QAILDATETN 180
NGNGALHILD LDISQGLQWP PLMQALAERS SSNPSSTPPP SLRITGCGRD VTVLNRTGDR 240
LTRFANSLGL QFQFHTLVIA EEDLAGLLLQ IRLLALSAVQ GESIAVNCVH FLHRFFNDDG 300
DMIGHFLSAI KSLNPRIVTM AEREANHGDP SFLNRFSEAL DHFMAIFDSL EATLPPNSRE 360
RLTLEQRWFG MEILDVVAAE AAERKQRHRR FEVWEEMMKR HGFANVPIGS FAFSQAKLLL 420
RLHYPSEGYN LQFLNDSLFL GWKNRLLFSV SSWK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ324233 | 0.0 | HQ324233.1 Brassica napus cultivar Hua shuang No. 5 transcription factor LAS (LAS) gene, promoter region, 5' UTR and complete cds. |
