PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009147650.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 335aa MW: 37569.9 Da PI: 7.8573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009147650.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.9e-52	19	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvka.....eekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelv +yLk+k+++++l++ +i++vd+yk++Pw+Lp k + + +e+ewyfFs+rd+ky++g r+nra++sgyWka XP_009147650.1 19 LPPGFRFHPTDEELVIHYLKRKADSSPLPV-AIIADVDLYKHDPWELPgKlnqnQ--TekalfGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 110 79**************************.88***********5455551..134555888************************* PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+v+s+ ++++vg+kk Lvfy+g+ pkg k+dW+mheyrl XP_009147650.1 111 TGTDKPVISTgdGNKKVGVKKALVFYTGKPPKGIKSDWIMHEYRL 155 *****9888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-63	15	187	IPR003441	NAC domain
PROSITE profile	PS51005	61.403	19	186	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	20	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MQVMETTDSS GGPPPQPNLP PGFRFHPTDE ELVIHYLKRK ADSSPLPVAI IADVDLYKHD 60 PWELPGKLNQ NQTEKALFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA TGTDKPVIST 120 GDGNKKVGVK KALVFYTGKP PKGIKSDWIM HEYRLADNKP SLRCDFGHKK NSLRLDDWVL 180 CRIYKKNNST SSRHHHHHHL DNDKDHHHHF HHDMMRDDDL YRLPLSVPGQ NVSRMNIFPA 240 VFSDNNDPAA IYDGGGGGAG YSMNHDFASS SGLNQKPNIP MPFWDQDPAK RFNGGVGDCS 300 DMVSSVAAPS SMQQQGGVLG DGLDRTSYHL TGLNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-70	18	189	14	171	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269\|PubMed:16055634}.
Uniprot	TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269\|PubMed:15100403, ECO:0000269\|PubMed:16055634, ECO:0000269\|PubMed:18849494}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009147650.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974757	0.0	KF974757.1 Brassica napus NAC transcription factor 18-1 (NAC18-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009147650.1	0.0	PREDICTED: NAC domain-containing protein 18 isoform X1
Swissprot	Q9LD44	1e-120	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A397Z0S5	0.0	A0A397Z0S5_BRACM; Uncharacterized protein
STRING	Bra018997.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52880.1	1e-109	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]