PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009147651.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 327aa MW: 36686 Da PI: 7.5823

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009147651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.4e-53	19	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv +yLk+k+++++l++ +i++vd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ XP_009147651.1 19 LPPGFRFHPTDEELVIHYLKRKADSSPLPV-AIIADVDLYKHDPWELPEKALFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIST 112 79**************************.88***********8888899***********************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+g+ pkg k+dW+mheyrl XP_009147651.1 113 gdGNKKVGVKKALVFYTGKPPKGIKSDWIMHEYRL 147 888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-65	15	179	IPR003441	NAC domain
PROSITE profile	PS51005	61.763	19	178	IPR003441	NAC domain
Pfam	PF02365	7.2E-28	20	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MQVMETTDSS GGPPPQPNLP PGFRFHPTDE ELVIHYLKRK ADSSPLPVAI IADVDLYKHD 60 PWELPEKALF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPVI STGDGNKKVG 120 VKKALVFYTG KPPKGIKSDW IMHEYRLADN KPSLRCDFGH KKNSLRLDDW VLCRIYKKNN 180 STSSRHHHHH HLDNDKDHHH HFHHDMMRDD DLYRLPLSVP GQNVSRMNIF PAVFSDNNDP 240 AAIYDGGGGG AGYSMNHDFA SSSGLNQKPN IPMPFWDQDP AKRFNGGVGD CSDMVSSVAA 300 PSSMQQQGGV LGDGLDRTSY HLTGLNW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-73	18	181	14	171	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269\|PubMed:16055634}.
Uniprot	TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269\|PubMed:15100403, ECO:0000269\|PubMed:16055634, ECO:0000269\|PubMed:18849494}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009147651.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974757	0.0	KF974757.1 Brassica napus NAC transcription factor 18-1 (NAC18-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009147651.1	0.0	PREDICTED: NAC domain-containing protein 18 isoform X2
Swissprot	Q9LD44	1e-123	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A397Z0S5	0.0	A0A397Z0S5_BRACM; Uncharacterized protein
STRING	Bra018997.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52880.1	1e-111	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]