PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009147840.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 444aa    MW: 50028.4 Da    PI: 6.4406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009147840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS509.99.7e-156534411374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg+l++a+a+L++ls l+spdgd+mqR+aayfteALa+r+++s+++lykal++++ +++n+see+++++lf++++Pilk+s+
  XP_009147840.1  53 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQRKTSNVSEEVHVRRLFFDMFPILKVSY 147
                     689******************************************************************************************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++N+aIlea+ege++vH+iD+d+ +++QW+aL+q ++sRpegpp+lRiT v++    +ke l ++++rL++ Ae+l++pf+fn+ v+++le+l+
  XP_009147840.1 148 LLTNRAILEAMEGEKMVHVIDLDACEPAQWLALIQDFNSRPEGPPHLRITCVHR----HKEVLDQMAHRLTEEAEKLDIPFQFNP-VVSSLESLN 237
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                     +++Lrvk+gEalaV++vlqlh++l                  ++s++l+s  ++d++L++++slsPk++vv+eq++dhn+++++er+le+l++y+
  XP_009147840.1 238 VDQLRVKTGEALAVSSVLQLHNFLasdddilrkngcslrgdsASSLPLPSsgRIDRFLNAMWSLSPKIMVVTEQDSDHNGSTLMERLLESLYTYA 332
                     ****************************************9977777777779****************************************** PP

            GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                     alfd+leak+pr+ ++rikvE++++g+ei+n++aceg+er+erhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgy+++eesg++v+
  XP_009147840.1 333 ALFDCLEAKVPRTWQDRIKVEKMFFGEEIKNIIACEGSERKERHEKLEKWSQRIDLAGFGNVPLSYFAMLQARRLLQGYGFDGYMIKEESGCAVI 427
                     *********************************************************************************************** PP

            GRAS 361 gWkdrpLvsvSaWr 374
                     +W+drpL+svSaWr
  XP_009147840.1 428 CWQDRPLYSVSAWR 441
                     *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.60727421IPR005202Transcription factor GRAS
PfamPF035143.4E-15353441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC  60
ANHVASGSLQ NANAALEQLS LLSSPDGDTM QRVAAYFTEA LANRILKSWP GLYKALNATQ  120
RKTSNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ACEPAQWLAL  180
IQDFNSRPEG PPHLRITCVH RHKEVLDQMA HRLTEEAEKL DIPFQFNPVV SSLESLNVDQ  240
LRVKTGEALA VSSVLQLHNF LASDDDILRK NGCSLRGDSA SSLPLPSSGR IDRFLNAMWS  300
LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTWQDRI KVEKMFFGEE  360
IKNIIACEGS ERKERHEKLE KWSQRIDLAG FGNVPLSYFA MLQARRLLQG YGFDGYMIKE  420
ESGCAVICWQ DRPLYSVSAW RCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-67364431380Protein SCARECROW
5b3h_D1e-67364431380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.3460.0bud| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009147840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147840.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A397YU880.0A0A397YU88_BRACM; Uncharacterized protein
STRINGBra018848.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]