PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009148051.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

DBB

Protein Properties

Length: 239aa MW: 26248 Da PI: 5.3244

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009148051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.6	3.9e-06	5	33	6	34
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeH 34 C+ ++++e++ fC ++ lC+ C + H XP_009148051.1 5 CDVCDKEEASVFCCADEAALCNGCDRHVH 33 *************************9988 PP
2	zf-B_box	29.1	2e-09	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++ C+ ++e ++ lfC++++ lC++C +H+ Ht XP_009148051.1 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAneHT 92 789*****************************767876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.584	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.3E-7	4	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.68E-6	5	33	No hit	No description
SuperFamily	SSF57845	8.93E-5	50	91	No hit	No description
SMART	SM00336	6.3E-16	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.182	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.0E-7	55	93	IPR000315	B-box-type zinc finger
CDD	cd00021	7.11E-11	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TPKDAPLCDI 60 CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL TGIKLSASPS AYPRASNSGA 120 TLGQAKTRPK SVSGEVPSSA SSEVFASSPS TTTSNYYYGL EETYQQASDS GSGSGSGSIS 180 EYLMETLPGW RVEDLLEDPS CVSYEDNNNI FTKINNNGVY DGSSSQYQHQ GFWEQKPFS

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009148051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189521	0.0	AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148051.1	0.0	PREDICTED: B-box zinc finger protein 20-like
Swissprot	Q0IGM7	1e-131	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A398AGZ8	1e-179	A0A398AGZ8_BRACM; Uncharacterized protein
TrEMBL	M4D5X2	1e-179	M4D5X2_BRARP; Uncharacterized protein
STRING	Bra011879.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6597	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	1e-114	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]