PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009148228.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 646aa MW: 71198.7 Da PI: 5.5691

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009148228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.7	3.7e-16	359	397	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_009148228.1 359 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCIDCFNKP 397 689**********************************96 PP
2	TCR	52.6	9e-17	444	482	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN XP_009148228.1 444 RHKRGCNCKKSNCLKKYCECFQGGVGCSINCRCEGCKNA 482 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	358	399	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.245	359	484	IPR005172	CRC domain
Pfam	PF03638	6.1E-12	361	396	IPR005172	CRC domain
SMART	SM01114	2.1E-17	444	485	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.8E-12	446	482	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MDTPQKSITQ IETPVSKSRF EDSPVFNYIN SLSPIRPVKS IPNPHQFSTL NFTSPPSVFT 60 SPHLTSSHKE SRFFKTHHPS PDPTILVQES PDDSKSNEEA AAEADATTEF NIDASTEMEQ 120 PQIVKYDVKE TNLDETTDLS LVPYASPPRK ENGSASEDAP GMEMYDNVQG KNETPDWDRL 180 IADSSEFLIF SSPNDSEAFR CLMMQRASPS QAPSVMMPTM QPGSINEPES SNASPYGAVS 240 VLHRGIRRRC LDFEMPGNKQ TSSENNTASR CVVPSIGLHL NALLMSTKDC TTNNTTHDYS 300 CSEKYQVGLQ GSSSTLQETL DQTETETRED VPVEPTLEEL HLSSPKKKRV KLEAGEGESC 360 KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP 420 KVIKSSDLVL ETGDDASKTP ASARHKRGCN CKKSNCLKKY CECFQGGVGC SINCRCEGCK 480 NAFGRKDGSA IVDMEAEQEE ENETSVKNRR AKTQENSEVY LMRKEESSAL PATPMSVYRQ 540 QLVQLKNMMP PPQSVLGVGS SSSGMFNSQY TRKPEMKSLE TVAEDGAEEM PEILSHSSID 600 NINAVSPNGK RVSPPHLDSS SSGRRSGGRK LILQSIPTFP SLTPQH

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MDTPQKSITQ IETPVSKSRF EDSPVFNYIN SLSPIRPVKS IPNPHQFSTL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHHPS PDPTILVQES PDDSKSNEEA AAEADATTEF NIDASTEMEQ  120
PQIVKYDVKE TNLDETTDLS LVPYASPPRK ENGSASEDAP GMEMYDNVQG KNETPDWDRL  180
IADSSEFLIF SSPNDSEAFR CLMMQRASPS QAPSVMMPTM QPGSINEPES SNASPYGAVS  240
VLHRGIRRRC LDFEMPGNKQ TSSENNTASR CVVPSIGLHL NALLMSTKDC TTNNTTHDYS  300
CSEKYQVGLQ GSSSTLQETL DQTETETRED VPVEPTLEEL HLSSPKKKRV KLEAGEGESC  360
KRCNCKKSKC LKLYCECFAA GVYCIEPCSC IDCFNKPIHE DTVLATRKQI ESRNPLAFAP  420
KVIKSSDLVL ETGDDASKTP ASARHKRGCN CKKSNCLKKY CECFQGGVGC SINCRCEGCK  480
NAFGRKDGSA IVDMEAEQEE ENETSVKNRR AKTQENSEVY LMRKEESSAL PATPMSVYRQ  540
QLVQLKNMMP PPQSVLGVGS SSSGMFNSQY TRKPEMKSLE TVAEDGAEEM PEILSHSSID  600
NINAVSPNGK RVSPPHLDSS SSGRRSGGRK LILQSIPTFP SLTPQH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	363	481	14	120	Protein lin-54 homolog
5fd3_B	1e-16	363	481	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	351	PKKKRVKL
2	344	352	PKKKRVKLE

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269\|PubMed:18057042}.
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00433	DAP	Transfer from AT4G14770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009148228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148228.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Swissprot	F4JIF5	0.0	TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBL	M4F740	0.0	M4F740_BRARP; Uncharacterized protein
STRING	Bra036900.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]