PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009148348.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 702aa MW: 80146.4 Da PI: 7.7908

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009148348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1.1e-19	85	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w+vt + ++HnH+l XP_009148348.1 85 DFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSVEWRVTGFANHHNHDLL 178 6************9998877356667999*********999999*****************9988889***********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-16	85	178	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-20	301	390	IPR018289	MULE transposase domain
Pfam	PF04434	1.9E-8	576	610	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.742	579	612	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MCIVIPMLLR SLLLLCACQV RSKMSDDAGQ MLLIYDDPSD HRSLSLDDAS STEESPDGTG 60 LSLEAVNDVI PYIGQRFLTH DAAYDFYSTF AKRCGFSIRR HRTEGKDGVG KGLTRRYFVC 120 HRAGNTPVKT LSEGKPQRNR RSSRCGCQAY LRISKITELG SVEWRVTGFA NHHNHDLLEP 180 SQVRFLPAYR SISDADKSRI LMFSKTGITV QQMMRLMELE KCVEPGFLPF TEKDVRNLLQ 240 SFKKLDPEDE NIDFLRMCQS IKEQDPNFKF EFTLDANDKL ENIAWSYASS IQAYEIFGDA 300 VVFDTTHRLS AVEMPLGIWV GVNNYGVPCF FGCVLLRDEN VRSWSWALQA FTGFMSGKAP 360 QTILTDHNMC LKEAIDGEMP ATKHALCIWM VVGKFPSWFN AALGERYNDW KAEFYRLYHL 420 ESIEEFELGW RDMVNSFGLH TNRHINNLYA SRSLWSLPYL RSHFLAGMTL SGRSKAINAF 480 IQRFLSAQTR LAHFVEQVAV AVDFKDQATE QQTMQQNLQN ISLKTGAPME SHAASVLTPF 540 AFSKLQEQLV LAAHYASFQM EDGYLVRHHT KLDGGRKVYW VPQEGIISCS CQLFEFSGFL 600 CRHALRVLST GNCFQLPDRY LPLRWRRIST SFSKTFRSNA DDHGERVQFL QNLVSTLVSE 660 SSKSKERLEI ATEQTSILLS RIREQPISSL SLRDITSVQR NF

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MCIVIPMLLR SLLLLCACQV RSKMSDDAGQ MLLIYDDPSD HRSLSLDDAS STEESPDGTG  60
LSLEAVNDVI PYIGQRFLTH DAAYDFYSTF AKRCGFSIRR HRTEGKDGVG KGLTRRYFVC  120
HRAGNTPVKT LSEGKPQRNR RSSRCGCQAY LRISKITELG SVEWRVTGFA NHHNHDLLEP  180
SQVRFLPAYR SISDADKSRI LMFSKTGITV QQMMRLMELE KCVEPGFLPF TEKDVRNLLQ  240
SFKKLDPEDE NIDFLRMCQS IKEQDPNFKF EFTLDANDKL ENIAWSYASS IQAYEIFGDA  300
VVFDTTHRLS AVEMPLGIWV GVNNYGVPCF FGCVLLRDEN VRSWSWALQA FTGFMSGKAP  360
QTILTDHNMC LKEAIDGEMP ATKHALCIWM VVGKFPSWFN AALGERYNDW KAEFYRLYHL  420
ESIEEFELGW RDMVNSFGLH TNRHINNLYA SRSLWSLPYL RSHFLAGMTL SGRSKAINAF  480
IQRFLSAQTR LAHFVEQVAV AVDFKDQATE QQTMQQNLQN ISLKTGAPME SHAASVLTPF  540
AFSKLQEQLV LAAHYASFQM EDGYLVRHHT KLDGGRKVYW VPQEGIISCS CQLFEFSGFL  600
CRHALRVLST GNCFQLPDRY LPLRWRRIST SFSKTFRSNA DDHGERVQFL QNLVSTLVSE  660
SSKSKERLEI ATEQTSILLS RIREQPISSL SLRDITSVQR NF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.24182	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009148348.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF424595	0.0	AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009148348.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D3C900	0.0	A0A0D3C900_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1K9	0.0	A0A3P6F1K9_BRAOL; Uncharacterized protein
STRING	Bo5g010680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]