PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149055.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 342aa    MW: 38255.9 Da    PI: 7.5454
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.81.9e-127234231374
            GRAS  31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQW 125
                     +s +g p+qRl ay+ e+L arl +s+s++ykal++++ +     e l+++++++e++P++kf++  aN aI eav++e+ vHiiDf+isqG+QW
  XP_009149055.1   2 VSVSGVPVQRLGAYMREGLVARLGSSGSSIYKALRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQW 93 
                     688999*********************************9...9*************************************************** PP

            GRAS 126 paLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                     ++L++aL +Rp+gpp++RiTg+++p+s+  ++  le +g+rL k+Ae +gvpfef+  +a  ++++e+e+L v++gEalaVn+ l lh+++desv
  XP_009149055.1  94 VSLIRALGARPGGPPRVRITGIDDPRSSfaRQGGLELVGQRLGKLAEMCGVPFEFHG-AALCCTEVEIEKLGVRNGEALAVNFPLVLHHMPDESV 187
                     *************************999999**************************.899********************************** PP

            GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                     ++e++rd++L+lvk+lsP+vv++veqea++n+++Fl rf+e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn++ ceg er+erhe l+
  XP_009149055.1 188 TVENHRDRLLRLVKRLSPNVVTLVEQEANTNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLIGCEGVEREERHEPLG 282
                     *********************************************************************************************** PP

            GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     kWr+r+++aGFkp+pls++a++++k ll+ ++++ y++ee++g+l+lgWk++pL++ +aWr
  XP_009149055.1 283 KWRSRFHMAGFKPYPLSSYANATIKGLLESYSEK-YTLEERDGALYLGWKNQPLITSCAWR 342
                     ********************************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.5991323IPR005202Transcription factor GRAS
PfamPF035146.7E-1252342IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVSVSGVPVQ RLGAYMREGL VARLGSSGSS IYKALRCKDP TGPELLTYMH ILYEACPYFK  60
FGYESANGAI AEAVKNESFV HIIDFQISQG GQWVSLIRAL GARPGGPPRV RITGIDDPRS  120
SFARQGGLEL VGQRLGKLAE MCGVPFEFHG AALCCTEVEI EKLGVRNGEA LAVNFPLVLH  180
HMPDESVTVE NHRDRLLRLV KRLSPNVVTL VEQEANTNTA PFLPRFVETM NHYLAVFESI  240
DVKLARDHKE RINVEQHCLA REVVNLIGCE GVEREERHEP LGKWRSRFHM AGFKPYPLSS  300
YANATIKGLL ESYSEKYTLE ERDGALYLGW KNQPLITSCA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-63534236375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149055.10.0PREDICTED: scarecrow-like protein 5
RefseqXP_018436740.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A3P5YN280.0A0A3P5YN28_BRACM; Uncharacterized protein
STRINGBra018860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]