PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149196.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 628aa    MW: 69959.4 Da    PI: 5.3011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09521569348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E + lv++v ++G g W+ I +       +Rt+ ++k++w+++l
   XP_009149196.1 521 AWSLSEVKNLVEGVSKYGVGKWSVIKKLSYssfPHRTPVDLKDKWRNLL 569
                      7**************************9999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.595514573IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-14515572IPR009057Homeodomain-like
SuperFamilySSF466892.62E-16516572IPR009057Homeodomain-like
SMARTSM007171.9E-8518571IPR001005SANT/Myb domain
CDDcd116603.32E-21520570No hitNo description
PfamPF002495.7E-7521569IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MGTMVGSVED YGEMFQDAVD QTSGASLSSS NQIENPVVYK LVRVAQDGRL VPATDEEMLE  60
VKDLVENNEN DISVVPDPGQ YEYITDEGSP SQFLQLDSLE GFFQLETAEA YTENLNSRLE  120
VCPPPLELLQ SKEELVYGSQ MPFTLLDTNY HSSNELPGDE EFVLSEVLLQ EPVCFSSDGC  180
GIDQPMDVSP YSNAAGGSPK APALSTTAST PGASRDTEEI CLGNLSIKAL QDTFRATFGR  240
ETTCKDKLWL ERKIKMGRIN PCVIPTTSLT VDDTKLILGG QDSDMVVAFS KDTFDEGRAS  300
PDCIKRHPND FGYSPVEAFV DHYSGNEDFE GEYRSAKRVR KATRRYIEEI SKVDDEKQQS  360
KESPIPSKDE RSINTVSSGR RVVVTRMVSL GGSIIQVPYV SHVRRSRPRE NIMALGEFNS  420
GLWEVKGNPE ESDLNLSQSQ LNNDVKRVSG VKSVSGPVQK KITTNDQSYK DHSKPKLREV  480
DEDIMEPEYM DSSGDSSDDS TYNRVDRPIT QSAMRRKHHR AWSLSEVKNL VEGVSKYGVG  540
KWSVIKKLSY SSFPHRTPVD LKDKWRNLLK ACFARAPSNK MGSMRKYGSM AIPSQVLSQV  600
KELSQKKSHV SPARKARMVK ASSRHGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149196.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149196.10.0PREDICTED: uncharacterized protein LOC103872532
RefseqXP_018508046.10.0PREDICTED: uncharacterized protein LOC103872532
TrEMBLA0A397Z6F30.0A0A397Z6F3_BRACM; Uncharacterized protein
STRINGBra025973.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3