PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149205.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 298aa    MW: 32639.3 Da    PI: 9.3705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     + +WT++E++ l+ +v+++G+g Wk I r          R+  ++k++w+++
   XP_009149205.1  5 KSKWTEDEEDALLGGVRKHGPGKWKNILRDPEfaavlSLRSNIDLKDKWRNL 56
                     679**********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.132161IPR017930Myb domain
SuperFamilySSF466891.44E-14261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-13357IPR009057Homeodomain-like
SMARTSM007171.9E-6459IPR001005SANT/Myb domain
PfamPF002499.5E-8556IPR001005SANT/Myb domain
CDDcd116602.79E-17756No hitNo description
SMARTSM005262.1E-14124188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-13125204IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.697126200IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.109.9E-9126191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.7E-10128198IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGKEKSKWTE DEEDALLGGV RKHGPGKWKN ILRDPEFAAV LSLRSNIDLK DKWRNLSVPA  60
DIQGSKDKVR TPKIKAAAFQ LAAVAAAATT PSPSSVSSPV APPLPRSGSS DLSIGDSCNM  120
LIDAKNAPRY DGMIFEALSA LKDANGSDVT TIFNFIEQKM YEVPEKRVLG SRLRRLAAQG  180
KLEKVSQLKS GTQNLYRMNN NSFLTMRTPV PARPKEANAK PRQTANSQGL TVSQEKIDLS  240
SGTAAFKLYE LDGKLEVLSG AVDDRARMTE LAERAEIMLL LAEELHERCC RGEIVELN
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149205.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149205.10.0PREDICTED: telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-115TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLM4EB080.0M4EB08_BRARP; Uncharacterized protein
STRINGBra025967.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-114MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]