PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149276.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 334aa    MW: 36828.7 Da    PI: 8.8851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-165094147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +W++ E+e+++da++++G   W+ I +++g ++t+ q++s+ qk+
   XP_009149276.1 50 REKWSEAEHERFLDAIELYGRA-WRQIQEHIG-TKTAVQIRSHAQKF 94
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-154499IPR009057Homeodomain-like
PROSITE profilePS5129420.2044599IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-94697IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-164897IPR006447Myb domain, plants
SMARTSM007172.3E-124997IPR001005SANT/Myb domain
PfamPF002493.7E-135093IPR001005SANT/Myb domain
CDDcd001671.23E-95295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAAPDRSEDG SSNVENGSCN SNEGTNHETS SCRIANAAKV RKPYTVSKQR EKWSEAEHER  60
FLDAIELYGR AWRQIQEHIG TKTAVQIRSH AQKFFSKVAR EADSGRDGSV KTVVIPPPRP  120
KRKPTHPYPR KSPVPYAQSP SSNLEKGTKS PTSVLSPFDS EDQVNRCSSP NSCTSDMQSI  180
DKKNDYATSK QSFKEDDAVT GSKPISSIML FGKIVLVTGE SHKTSSSRED SGVDHKSTTG  240
QDSRHVDTAL SLGVWDTSCT GSNVFGSVTE ISDNLEKSAE ARKRLTSLEK QEPCYRANGF  300
RPYKRCLSER EVTSSLSLVA SEEEGSRRRA RVCS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.147500.0seed| silique
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149276.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288892.10.0protein REVEILLE 7
SwissprotB3H5A81e-159RVE7_ARATH; Protein REVEILLE 7
TrEMBLA1YN100.0A1YN10_BRACM; EPR1
TrEMBLM4EAV50.0M4EAV5_BRARP; Uncharacterized protein
STRINGBra025914.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-150MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]