PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149550.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WOX

Protein Properties

Length: 203aa MW: 22863.2 Da PI: 5.3417

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.6e-21	78	138	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ XP_009149550.1 78 RNRWTPTSTQLQILESIYEEkSGTPNRRRIREIAAELsehgQITETNVYNWFQNRRARSKR 138 89***************9899**********************************97 PP
2	Wus_type_Homeobox	97	1.5e-31	77	140	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++ tPn+++i++i+aeL+e+G+i+++NV++WFQNr+aR+++kq XP_009149550.1 77 TRNRWTPTSTQLQILESIYEEKSGTPNRRRIREIAAELSEHGQITETNVYNWFQNRRARSKRKQ 140 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-16	71	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.046	74	139	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-18	76	143	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-14	76	143	IPR001356	Homeobox domain
CDD	cd00086	6.55E-15	78	140	No hit	No description
Pfam	PF00046	1.9E-18	78	138	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MERENQNGAY VGRGVMTEEQ METLRKQIAV YSVICEQLAL LHNSLSSFHP LSSGINPNGD 60 GYFNPMVASS SAQRISTRNR WTPTSTQLQI LESIYEEKSG TPNRRRIREI AAELSEHGQI 120 TETNVYNWFQ NRRARSKRKQ PQTIATTDQA EDAAVTTDEK RSCGDSGGFE SYEHILFPSP 180 DLGIEHLLSR GELSGDFNSY TID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149550.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	0.0	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149550.1	1e-151	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	1e-114	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A397YXH0	1e-150	A0A397YXH0_BRACM; Uncharacterized protein
TrEMBL	M4EAN0	1e-150	M4EAN0_BRARP; Uncharacterized protein
STRING	Bra025839.1-P	1e-151	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-117	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]