PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149642.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 250aa    MW: 28650.6 Da    PI: 6.5737
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-1517931195
                    HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    + ++ +++p +f+++h +  k+++k+ +l++  s ++W+v    ++++    lt+GWk+F  a++L+ gD+++Fk++g++ f  +v+
  XP_009149642.1 17 F-HNGVTIPLSFFSQHiQ-GKTNGKKWKLRSdASDQTWKVIQ--EGRR----LTEGWKDFTTAHDLRIGDILIFKHEGDMVF--HVT 93
                    3.5569**********64.4567889999987899*****99..8887....***********************9999888..665 PP
2B363.73e-20130223498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++++  ++ l+lp + ++   ++k+  k+++l +++g+sW+  l+y+  +++y+++kGWk+F+++n+ + gD +vF +++++++++++ v+ 
  XP_009149642.1 130 AEVTASNIHEDKLYLPVEATTCTALNKQ-CKEIILVNKEGNSWTGSLRYSEADDMYYIRKGWKKFCEENNCNIGDLFVFNVVRDRNTTPLMCVCP 223
                     567888999999******9955588875.57***************************************************9999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-203104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-203100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.702698IPR003340B3 DNA binding domain
CDDcd100171.70E-14795No hitNo description
SMARTSM010192.0E-18998IPR003340B3 DNA binding domain
PfamPF023623.9E-101890IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-17126220IPR015300DNA-binding pseudobarrel domain
CDDcd100173.30E-13127223No hitNo description
PROSITE profilePS5086313.098127225IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-18127216IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-17128225IPR003340B3 DNA binding domain
PfamPF023624.0E-19130223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGNPQEPHFL KPLLPGFHNG VTIPLSFFSQ HIQGKTNGKK WKLRSDASDQ TWKVIQEGRR  60
LTEGWKDFTT AHDLRIGDIL IFKHEGDMVF HVTPFGLSCC EIQFTHPHSI KEEADVDDTH  120
SFSFDYCFLA EVTASNIHED KLYLPVEATT CTALNKQCKE IILVNKEGNS WTGSLRYSEA  180
DDMYYIRKGW KKFCEENNCN IGDLFVFNVV RDRNTTPLMC VCPERKECAE LLIKHLSRMN  240
GDIASSSRVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149642.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894650.0AC189465.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB076B03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149642.10.0PREDICTED: B3 domain-containing protein REM8-like
TrEMBLM4EAQ80.0M4EAQ8_BRARP; Uncharacterized protein
STRINGBra025867.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-62B3 family protein