PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149649.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 194aa    MW: 22242.3 Da    PI: 8.5207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.2e-15821591095
                     HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      ++++ l++p  f+++h +gk +++ t tl++    ++W+v    + ++    lt+GWkeF++a++L+ gD+v+Fkl+g++ f  +v+
  XP_009149649.1  82 GFQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159
                     55566.9**********7555.56668888874777*****99..7777....************************998888..665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-2167166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2069170IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19672164IPR003340B3 DNA binding domain
CDDcd100173.05E-1673161No hitNo description
SMARTSM010193.0E-1875164IPR003340B3 DNA binding domain
PfamPF023627.8E-1085156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MVPIHFLKSP NQTRFPPIFG KPFPLLTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP  60
IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV  120
IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH  180
DHQNNSKCDS KSPH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149649.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895990.0AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149649.11e-143PREDICTED: B3 domain-containing protein REM5-like
SwissprotQ8H2D03e-44REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A078ILG91e-135A0A078ILG9_BRANA; BnaA10g28180D protein
STRINGBra036483.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16565313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-46B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]