PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149661.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 577aa    MW: 64565.8 Da    PI: 4.6576
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.22.4e-1332075773374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   s+e+laa+++++ev+P++kf++l+
  XP_009149661.1 207 QILISCAHALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVCPCFKFGFLA 298
                     78*****************************************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aI +++ gee+vHiiDfdi+qG Q+++L++++a+ p +g p+lR+Tgv++pes+  s   l+ +g rL+++A+  gv+f f++ va++++ +
  XP_009149661.1 299 ANDAIIDSIRGEEEVHIIDFDINQGNQYMTLIKTIADLPvRGRPRLRLTGVDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFTFKA-VASKTNIV 392
                     *************************************9999**************9989999************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++++L +kpgEal+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+fdsl+++lpres+er++
  XP_009149661.1 393 SPSTLGCKPGEALIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFDSLDMTLPRESQERMN 487
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s ++ +++++l+++ +   y+v+ee g+l ++W++++L+++SaWr
  XP_009149661.1 488 VERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPRPMSGRVRSNIETLIKRDYCSKYKVKEEMGELHFCWEEKSLIVASAWR 577
                     *************************************************************666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.389179557IPR005202Transcription factor GRAS
PfamPF035148.3E-131207577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MSLVRSAELS AAAAYRNPKL YSLNENGYNT GGGTSVEMFD PDRSKNTCLT DDSYPSQSYE  60
KYFLDSPTDE FAQQQHPVGS GGASVSSFGS LESFPYQSRP VLGCSMEYQL PFDSTSTSSM  120
SLFGGYQVAT QSPSMEFDDE QMRSKIQELE RALLDDEDDD DKMIGIDQLM EIDNEWSPKE  180
SSSEDSNSHA SSKEVISQST TTTTPKQILI SCAHALSEGK SEEALSMVNE LRQIVSIQGD  240
PSQRIAAYMV EGLAARMAAS GKFLYKALKC KEPPSDERLA AMQVLFEVCP CFKFGFLAAN  300
DAIIDSIRGE EEVHIIDFDI NQGNQYMTLI KTIADLPVRG RPRLRLTGVD DPESVQRSVG  360
GLRIIGLRLE QLAKDHGVSF TFKAVASKTN IVSPSTLGCK PGEALIVNFA FQLHHMPDES  420
VTTVNQRDEL LHMVKSLNPK LVTVVEQDVN TNTSPFFPRF MEAYEYYSAV FDSLDMTLPR  480
ESQERMNVER QCLARDIVNI VACEGEERIE RYEVAGKWRA RMMMAGFSPR PMSGRVRSNI  540
ETLIKRDYCS KYKVKEEMGE LHFCWEEKSL IVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-572075776375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149661.20.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A3P5YT000.0A0A3P5YT00_BRACM; Uncharacterized protein
STRINGBo5g034360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]