PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149673.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 992aa    MW: 108195 Da    PI: 10.2841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-06872893627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C++f +tG C+ G++Ck +H++
  XP_009149673.1 872 CPDFEATGSCPQGSKCKLHHPK 893
                     *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM000272.2E-12397IPR000261EH domain
PROSITE profilePS502229.966843IPR002048EF-hand domain
PROSITE profilePS5003115.521999IPR000261EH domain
SuperFamilySSF474734.08E-181085IPR011992EF-hand domain pair
Gene3DG3DSA:1.10.238.101.6E-301196IPR011992EF-hand domain pair
CDDcd000523.71E-231379No hitNo description
PROSITE profilePS502226.5914477IPR002048EF-hand domain
SMARTSM003560.049762790IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723762791IPR000571Zinc finger, CCCH-type
SMARTSM003564.3791815IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.493795816IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-4817842IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.089817843IPR000571Zinc finger, CCCH-type
SMARTSM003560.029844870IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.761844865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014866894IPR000571Zinc finger, CCCH-type
SMARTSM003560.65871893IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 992 aa     Download sequence    Send to blast
MAAPKPTGGQ DLFDTYFRRA DLDGDGRISG AEAVGFFQGS NLPKPVLAQV WSYADAKKAG  60
YLGRAEFYNA LKLVTVAQSR RELTPEIVKA AIYSPASANI PAPKINLAAT PSPQPRGPVA  120
QTPGVTSVAA AMRGSQMGGN VSTSNQQVVP GQQNQLTGPP PSQPPQNFQS QGMPPGGTIA  180
PRTANQPVPS NWISGRSVGP SGQVNSQIPS SQSGYGLTAP NSIANNIPQP HMTPAVISST  240
TTRPQVPVPA SGNGFPSDSI FGDVFSVAST QPKQHTTGTT LTMGISSVST GTVVAPEVAQ  300
FVARQSSIPH RGSLNRIENK STGSASKVAV GNASFLVKAG KIPTLEKQSK PPSDSSTSKV  360
SNAIDAPSGK CALSYSMDHP TTGLPESIMD SATSGEASVP HSGGDTSKTS DIPIQTDYAS  420
DCQQKKIPPN LDSSDLKRTV YVKRKANQLV ADSDIHSKSR SQIPTSDGYF KRNKNQLVRT  480
SESRVNHSPD DALDSRASAT MVSERSSCSA FSDAAVTRPY KRSKFSLVWT QNDQQSDLPS  540
SHMRYRRILP QLVPWKRVTY WRRLMNSVSA LRNGSFSNIS QKLSTMRKRH TVYTRSTNGY  600
SLRKSKVLSI GGSHLKWSKS IERDSRKANE EATLAVAAFS KKENEKHSGQ SSTRKTSRNH  660
LARKLVHGER IFRFGSLRYK MDPSRRTLQR ISDVDSPCSG PTENGKGAKR PFIPKRLVIG  720
HEEYVRVGNG NQLVRDPKKR TRALANEKVR WSLHNVRLRL AKKKKKYCQF FTRFGKCNKD  780
DGKCPYVHDP SKIAVCTKFL NGLCANDNCK LTHKVIPERM PDCSYFLQGL CNNEACPYRH  840
VHVNPSAAIC DGFLKGYCSD GNECRKKHSY TCPDFEATGS CPQGSKCKLH HPKNQGKGIK  900
RKRPSEPSEK NPRGRYFGSL QKLFSESEPM VVDRHPTESE DFGKEGFEFI SLGATEEEAG  960
DNNDQATEQS ISSESEEPAS IYELIKPVAL MR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C5e-1976089333168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C5e-1976089333168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.41495e-47leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149673.10.0PREDICTED: uncharacterized protein LOC103872998 isoform X1
TrEMBLM4DN420.0M4DN42_BRARP; Uncharacterized protein
STRINGBra017929.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57801012