PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149785.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 258aa    MW: 29421.2 Da    PI: 8.6929
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l  +v + G  +W+tI+   g+ R +k+c++rw +yl
   XP_009149785.1 20 KGLWSPEEDEKLRSYVLKCGHVCWSTIPIQAGLQRNGKSCRLRWVNYL 67
                     678*****************99************************97 PP
2Myb_DNA-binding51.91.7e-1673118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + ++T+eE+  l+ ++  lG++ W+ I+++++ gRt++++k++w++yl
   XP_009149785.1  73 KSAFTKEEETTLLSLHSILGNK-WAHISKYLP-GRTDNEIKNYWHSYL 118
                      578*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8821567IPR017930Myb domain
SMARTSM007172.4E-101969IPR001005SANT/Myb domain
SuperFamilySSF466898.8E-2919114IPR009057Homeodomain-like
PfamPF002491.8E-122067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-212174IPR009057Homeodomain-like
CDDcd001678.74E-92367No hitNo description
PROSITE profilePS5129425.37368122IPR017930Myb domain
SMARTSM007178.3E-1672120IPR001005SANT/Myb domain
PfamPF002491.9E-1573118IPR001005SANT/Myb domain
CDDcd001671.62E-1175118No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2475121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVCKSETSNR KLKSKEKQRK GLWSPEEDEK LRSYVLKCGH VCWSTIPIQA GLQRNGKSCR  60
LRWVNYLRPG LKKSAFTKEE ETTLLSLHSI LGNKWAHISK YLPGRTDNEI KNYWHSYLKK  120
SVPSTKHEST RTPQTHSITN SVKTLESTTG RSSSFINVGE SFSAKLSNFS PSVVFSEWLD  180
HSLVMDQLPQ THSYVQDHIV PEERGLAGTF GQRLYENSNS MVDYIPNSDF LLGDEIEFCT  240
SFSDSFLIDA LASEQRSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26201247110B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149785.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149785.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K45e-57LAF1_ARATH; Transcription factor LAF1
TrEMBLM4DNE00.0M4DNE0_BRARP; Uncharacterized protein
STRINGBra018027.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-129myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]