PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009149862.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 1579aa MW: 177615 Da PI: 5.3059

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009149862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	3.4E-7	42	161	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04781	6.5E-27	50	158	IPR006866	Domain of unknown function DUF627, N-terminal
SuperFamily	SSF48452	6.56E-7	50	158	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04780	2.6E-181	313	835	IPR006865	Domain of unknown function DUF629
PROSITE pattern	PS00028	0	371	392	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50235	22.894	1246	1578	IPR028889	Ubiquitin specific protease domain
Pfam	PF00443	2.9E-22	1246	1575	IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
SuperFamily	SSF54001	5.89E-34	1246	1577	No hit	No description
CDD	cd02257	2.26E-17	1337	1576	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016579	Biological Process	protein deubiquitination
GO:0005515	Molecular Function	protein binding
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1579 aa Download sequence Send to blast
MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSSEEPSN LAEIKAECEK ALTSFRRGSY 60 NKAIRLMKES CSRHQHSALI HRVQGTVCVK VSSVYEDAVT KQKYIRSAIE SARKAVELSP 120 NSIEFSHFYA NLLYESASDG REYEEVVQEC HRALAIENPI DPAKDSLQDE SQHKISTPEA 180 RIANVQDELR SLIQKSNLGS LSTWMKHLGN GEGEFRLFDM RKMAEDPIES NLVQTRRPNE 240 IKKATKTLEE KRKEIEVRVA AGRLLQQKSE SSSVDSVNSK GSDPALGSGQ RSGERRKHGN 300 ARKNGSTVER RDRVRSYWES TSKEMKKELL RIKVSDLKSH FSASKDGDAN DIIAEALSFC 360 EANKTWRFWV CCKCSEKFKD SESYMQHIVG EHMGNVFPKM QMVLPQSLDS ERIEMLLTSP 420 WKPLDFPAVV KLLCSQQKIQ NSEFSEFYAG GYMDDGDDCF QDAWNDTSPE KENIGDACNG 480 YEKNESEKDR LPNPFYLTDE WPISDDPERT KLLKSIRAAF ELLIKHSYLA TSHYDKVIQF 540 TLDELRNLPS VSQFLNRGLG QSPICIRFLG ATQLKKILQF LQDLSHACGV SRYSEQSNPN 600 DEVDLGLQIT EEIFLDGEGS CLLLDEKLLG SECIQEKHMG SALNNGDIAS SEDIANGNNV 660 SAGADGFLSW IFSGPSSGEQ TAIWMRTVEE KTNQGQKTME ILEKEVRDLK NLFERKCEHL 720 GYEGALQTVE DLCLEEGRKR ETSPDFTHES YESVLRKRRE ELNESAHEMD CLSSSFELEA 780 IKNVLRDADT VNRNQFGYEE TYTCTSSQLR DLESGEADEW GMKDSFSEAD SFIETAIQKQ 840 KEQLSTELNR IDARMMRGVT VVQQLELKLG PASSNDYQIV LLPLVRSYMR AHLEALAEKD 900 ATEKSDAASK AFLVELALDS KKEARGRNDQ SKHTQEKSKD KKKNKHSKKL KDSKASVGND 960 HRFNVDSVEH SLPSVASFGD PSEADVVPEA VESLKEQEEE CRRRTELELD EIKLEETLEY 1020 QRRIENEAKE KHIAEQQKKY SSLVTTSDAE AVHDICRDGV VVGLELRGQE KSLSQENLVQ 1080 RNGLSHDLEV THVYTNGDCR STNHCAIPDA ATVQDVKSQK VVANGVATQD GVLQSDQRIG 1140 RRGRRQKTSN KVVGPSESTG KERESETLRS NGDVGTKTLR QLQAEEDEEE KFQADLKKAV 1200 RQSLDTYQGG RNMTSCLRTS VEVNSHEISD STKESPTSTE VGIFGTGLQN EVGEYNCFLN 1260 VIIQSLWNLG VFRAEFLRSS TLDHHHVGDP CVVCSLYEVL TALSAASREI RKEPVTPSTL 1320 RIALSNLYPD SSFFQEAQMN DASEVLAVIF DCLHRSFAQS ASVSDTDSSE SNYTGSWDCA 1380 NRTCIAHSLF GMNIFEQLNC YSCGLESRHM KYTSFFHNIN ASALRNMKVT CPETAFDELL 1440 NLVEMNHQLA CDPETGGCGK PNHIRHFLNT PPHVFTAVLG WQNTCESVED IAATLAALNT 1500 EIDISIMYRG LDPKSIYSLA SVVCYYGQHY HCFAYSHEHD RWIMYDDKTV KVIGSWSDIL 1560 SMCKKGHLQP QLLLYEKQR

Sequence ? help Back to Top

Protein Sequence Length: 1579 aa Download sequence Send to blast

MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSSEEPSN LAEIKAECEK ALTSFRRGSY  60
NKAIRLMKES CSRHQHSALI HRVQGTVCVK VSSVYEDAVT KQKYIRSAIE SARKAVELSP  120
NSIEFSHFYA NLLYESASDG REYEEVVQEC HRALAIENPI DPAKDSLQDE SQHKISTPEA  180
RIANVQDELR SLIQKSNLGS LSTWMKHLGN GEGEFRLFDM RKMAEDPIES NLVQTRRPNE  240
IKKATKTLEE KRKEIEVRVA AGRLLQQKSE SSSVDSVNSK GSDPALGSGQ RSGERRKHGN  300
ARKNGSTVER RDRVRSYWES TSKEMKKELL RIKVSDLKSH FSASKDGDAN DIIAEALSFC  360
EANKTWRFWV CCKCSEKFKD SESYMQHIVG EHMGNVFPKM QMVLPQSLDS ERIEMLLTSP  420
WKPLDFPAVV KLLCSQQKIQ NSEFSEFYAG GYMDDGDDCF QDAWNDTSPE KENIGDACNG  480
YEKNESEKDR LPNPFYLTDE WPISDDPERT KLLKSIRAAF ELLIKHSYLA TSHYDKVIQF  540
TLDELRNLPS VSQFLNRGLG QSPICIRFLG ATQLKKILQF LQDLSHACGV SRYSEQSNPN  600
DEVDLGLQIT EEIFLDGEGS CLLLDEKLLG SECIQEKHMG SALNNGDIAS SEDIANGNNV  660
SAGADGFLSW IFSGPSSGEQ TAIWMRTVEE KTNQGQKTME ILEKEVRDLK NLFERKCEHL  720
GYEGALQTVE DLCLEEGRKR ETSPDFTHES YESVLRKRRE ELNESAHEMD CLSSSFELEA  780
IKNVLRDADT VNRNQFGYEE TYTCTSSQLR DLESGEADEW GMKDSFSEAD SFIETAIQKQ  840
KEQLSTELNR IDARMMRGVT VVQQLELKLG PASSNDYQIV LLPLVRSYMR AHLEALAEKD  900
ATEKSDAASK AFLVELALDS KKEARGRNDQ SKHTQEKSKD KKKNKHSKKL KDSKASVGND  960
HRFNVDSVEH SLPSVASFGD PSEADVVPEA VESLKEQEEE CRRRTELELD EIKLEETLEY  1020
QRRIENEAKE KHIAEQQKKY SSLVTTSDAE AVHDICRDGV VVGLELRGQE KSLSQENLVQ  1080
RNGLSHDLEV THVYTNGDCR STNHCAIPDA ATVQDVKSQK VVANGVATQD GVLQSDQRIG  1140
RRGRRQKTSN KVVGPSESTG KERESETLRS NGDVGTKTLR QLQAEEDEEE KFQADLKKAV  1200
RQSLDTYQGG RNMTSCLRTS VEVNSHEISD STKESPTSTE VGIFGTGLQN EVGEYNCFLN  1260
VIIQSLWNLG VFRAEFLRSS TLDHHHVGDP CVVCSLYEVL TALSAASREI RKEPVTPSTL  1320
RIALSNLYPD SSFFQEAQMN DASEVLAVIF DCLHRSFAQS ASVSDTDSSE SNYTGSWDCA  1380
NRTCIAHSLF GMNIFEQLNC YSCGLESRHM KYTSFFHNIN ASALRNMKVT CPETAFDELL  1440
NLVEMNHQLA CDPETGGCGK PNHIRHFLNT PPHVFTAVLG WQNTCESVED IAATLAALNT  1500
EIDISIMYRG LDPKSIYSLA SVVCYYGQHY HCFAYSHEHD RWIMYDDKTV KVIGSWSDIL  1560
SMCKKGHLQP QLLLYEKQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	737	758	RKRETSPDFTHESYESVLRKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009149862.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009149862.1	0.0	PREDICTED: uncharacterized protein LOC103873189
TrEMBL	M4DNL4	0.0	M4DNL4_BRARP; Uncharacterized protein
STRING	Bra018101.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2940	3	6