PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149989.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 192aa    MW: 20882.4 Da    PI: 8.8491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00089109131123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  XP_009149989.1 109 HRCPICGVEFPIGQALGGHMRKH 131
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-75175No hitNo description
PfamPF139128.6E-105276IPR007087Zinc finger, C2H2
SMARTSM003550.625375IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7645380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-7104131No hitNo description
PfamPF139125.9E-10109132IPR007087Zinc finger, C2H2
SMARTSM003550.057109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVARSENLDR TVEGTAGNNE KLERTVEDKA ANCLMLLSRI GENGGGGRES RVYRCKTCMK  60
EFSSFQSLGG HRASHNKHVD NSSSDEQSSL FSGSIAKTKR KTTNTTRSHR CPICGVEFPI  120
GQALGGHMRK HRNEEEASGA LVTRSFFPEA ATSMITTLKK SSSGKRVACF DLGPDSVESS  180
INLNLELGSS MY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149989.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149989.11e-140PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX856e-68ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DNY71e-139M4DNY7_BRARP; Uncharacterized protein
STRINGBra018225.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.16e-68C2H2 family protein