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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009150085.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family |
C2H2 |
| Protein Properties |
Length: 447aa MW: 50194.3 Da PI: 9.8766 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009150085.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 19.8 | 2.1e-06 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F+r nL+ H r H
XP_009150085.1 65 FICEICNKGFKRDQNLQLHRRGH 87
89*******************88 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 447 aa
Download sequence Send
to blast |
MIIPDDHHHL SFPSYVLHQE HITPNPNPNP NPTASNSNKR KRNLPDPDAE VIALSPNSLM 60
TTNRFICEIC NKGFKRDQNL QLHRRGHNLP WKLKQRTDKE QVKKKVYICP EKTCVHHDPG 120
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVVSDWKAH SKICGTREYK CDCGTLFSRK 180
DSFITHRAFC DALAEESARF ASVPPAAAAY LNNSSDAEVN LGNIKPNHQQ RLLDLTSSQL 240
DRHGFNVNRN NINGFMGQSS TNQLPLAANV FASSSSPSPH SASALLQNLW QLQGQSYQQW 300
LLNKNNNNII QSGMPNNQED HDTIRRELVI NGSSFSSEAR TSYNQNGGQE IASMSATTLL 360
QMAAQIGSKR SSSSSNNGMA FGLVTSSIFN NKEMENKIKT KEFDERGFTR DFLGVGSQNR 420
HRPILMVNHN LPTTNDGTPT TYMNHKT
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, especially in vascular initials, cortex, endodermis, and quiescent center (QC). {ECO:0000269|PubMed:25829440}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
