PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150111.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 227aa    MW: 25582.8 Da    PI: 4.9549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-2081130255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  XP_009150111.1  81 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAESAALAYDEAALKFKG 130
                     7********.**********93....36************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.01481138IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-2281139IPR016177DNA-binding domain
SMARTSM003801.7E-3781144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-3381139IPR001471AP2/ERF domain
PfamPF008475.0E-1481130IPR001471AP2/ERF domain
PRINTSPR003671.1E-118293IPR001471AP2/ERF domain
CDDcd000184.60E-2789139No hitNo description
PRINTSPR003671.1E-11104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPFGGDEPEE KEEAEEDENL FPVFSARSQH DMRVMVSALT QVIGNQQSIS QDSPSVYNPQ  60
DPSQPVAPSH QDQGNSMRRR RYRGVRQRPW GKWAAEIRDP QKAARVWLGT FETAESAALA  120
YDEAALKFKG SKAKLNFPER VNVAYNDQLS NSNYYSSNQI EPKNIPYYNQ YYQDGNNTDM  180
LSFSLTTSTT AATTSSSSGG SSRPQEEQDY ARFWRFGDSS SSSQSVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2780142467ATERF1
3gcc_A3e-2780142467ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150111.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608623e-73AY560862.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g61890) mRNA, complete cds.
GenBankBT0313573e-73BT031357.1 Arabidopsis thaliana unknown protein (At5g61890) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018515123.11e-166PREDICTED: ethylene-responsive transcription factor ERF114
SwissprotQ9FH541e-101EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLM4DSX91e-165M4DSX9_BRARP; Uncharacterized protein
STRINGBra019622.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-71ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]