PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150251.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 170aa    MW: 18827.7 Da    PI: 10.1253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0591113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  XP_009150251.1  91 HTCPICGLEFPMGQALGGHMRKH 113
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.4E-737113No hitNo description
PfamPF139123.4E-113863IPR007087Zinc finger, C2H2
SMARTSM003550.963961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1823961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.03491113IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-1091114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.82491118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVARSENLDQ TVEDTEATCL MLLSRVGECG RERGETRVFR CKTCMKEFSS FQALGGHRAS  60
HKKPVNNSSD EQSSSLSSGS VTKKTKKPLS HTCPICGLEF PMGQALGGHM RKHRNEKERG  120
ALVTRSFLPE AKFTTLKKSS SGKRVACFGM GLDPMERVIN LKLELGRTIY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150251.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936395e-31AB493639.1 Arabidopsis thaliana At3g46070 gene for hypothetical protein, partial cds, clone: RAAt3g46070.
GenBankAL3557755e-31AL355775.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12M12.
GenBankCP0026865e-31CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankDQ4467395e-31DQ446739.1 Arabidopsis thaliana clone pENTR221-At3g46070 zinc finger family protein (At3g46070) mRNA, complete cds.
GenBankDQ6531335e-31DQ653133.1 Arabidopsis thaliana clone 0000012225_0000008871 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150251.11e-123PREDICTED: zinc finger protein ZAT8-like
RefseqXP_013646942.11e-123zinc finger protein ZAT8-like
SwissprotQ9LX855e-72ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DSI41e-121M4DSI4_BRARP; Uncharacterized protein
STRINGBra019477.1-P1e-122(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-71C2H2 family protein