PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009150737.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 364aa    MW: 41207.8 Da    PI: 6.8059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009150737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-08199245555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++++P +     kK    a +L + ++Y++sLq
  XP_009150737.1 199 HSLAERARREKISKKMKYLQDIVPGC-----KKvTGQAGMLDEIINYVQSLQ 245
                     999***********************.....77799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-15191262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-7192249No hitNo description
PROSITE profilePS5088813.91194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15195263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5199245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-7200250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLEGLVSPEN LSLSSMDMSV LERLKWLRQQ QQKQVVSQSS DNSPELLQIL QFHESNNDEL  60
LQSTFSHFQM LGSGFGPNPN MGFGPSREAM DGCISRRSSL QMDPVDTMGF MLKNSEENRT  120
ISSKNKRKSE VKRREEEKTE KKIKVAAETE SNMKGKSSMS NNTEASSDTS KETSKGASEI  180
QKLDYIHVRS RRGQATDRHS LAERARREKI SKKMKYLQDI VPGCKKVTGQ AGMLDEIINY  240
VQSLQTQVEF LSMKLAVLNS ELELAVEDLY VKQDQTVIIQ KLLIIFFLFY YEFQLHAYFT  300
NLPVVNASKP SIMVDVPLFP LDQQGSLDLS VINLSQTTSI EAPSASWETQ SRSLFNTSSL  360
GFHY
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in hypocotyls and cotyledons. Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:23221598}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009150737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533910.0AK353391.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-36-E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150737.10.0PREDICTED: transcription factor HBI1-like isoform X1
SwissprotQ9ZPW30.0HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A397ZAM70.0A0A397ZAM7_BRACM; Uncharacterized protein
STRINGBra024474.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-140bHLH family protein