PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009150861.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 250aa MW: 26968.1 Da PI: 10.3355

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009150861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.3	6.7e-39	39	212	3	119
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ +++ XP_009150861.1 39 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSVRGSSTTIStstnctlss 132 79*************************************************************99999777.23333333322333455677777 PP TCP 89 ................................................kaaksaa.kskksqksaasalnlakesrakar 119 ++ ++ +++++q++aa+al ++++++++a XP_009150861.1 133 sldhkpfilgkrlredsgggkddmgsfatpagfwavparpdfgqvwsfASHQEMFlQQQQQQQPAAAALFVNQQQQQQAA 212 88888899999999999999999999999999999999999999999743444442444444444444444444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	44	98	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.3E-35	44	203	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSNNDGVMIS NGSLIEHQRQ QQQQQQQNLK QSSDGALVVK KPPAKDRHSK VDGRGRRIRM 60 PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST ASVSVRGSST 120 TISTSTNCTL SSSLDHKPFI LGKRLREDSG GGKDDMGSFA TPAGFWAVPA RPDFGQVWSF 180 ASHQEMFLQQ QQQQQPAAAA LFVNQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGAP 240 GSGRREDDQR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009150861.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007648	2e-40	AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBank	AK118679	2e-40	AK118679.1 Arabidopsis thaliana At5g23280 mRNA for unknown protein, complete cds, clone: RAFL19-95-A03.
GenBank	CP002688	2e-40	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150861.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-106	TCP7_ARATH; Transcription factor TCP7
TrEMBL	M4CZM0	0.0	M4CZM0_BRARP; Uncharacterized protein
STRING	Bra009667.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-59	TCP family protein