PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151003.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 313aa    MW: 34515.5 Da    PI: 8.272
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_155.11.7e-17157203450
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                     lkr rr+++NRe+ArrsR+RK++ ++ Le  v++L++eN++L k+l 
  XP_009151003.1 157 LKRMRRMYSNRESARRSRRRKQEHLADLESQVDSLKGENTTLYKQLI 203
                     8*****************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.3E-12154218IPR004827Basic-leucine zipper domain
PfamPF001704.0E-15156202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.887156202IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-12157204No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-12158202No hitNo description
PROSITE patternPS000360161176IPR004827Basic-leucine zipper domain
PfamPF124981.1E-4225301IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSITTYSSPP LFFPTKFHIQ KKMDGHTAKD TGMKRSASEL ALQEYLTKVM STSSALSRQE  60
STSPLEPSFD LKNHDHTGEL RDRHLLSETL FPAGVLLDAQ SSICKNLSAD SPVSANKPEV  120
RRRAQRTTSV SSHGHSDEED AETEAGQSEM TNDPNHLKRM RRMYSNRESA RRSRRRKQEH  180
LADLESQVDS LKGENTTLYK QLIDATQLFR SAGTNNRILK SDVETLRIKV KLAEDLVARG  240
SLTSSLNQLL QTHLSPPTQS INSLHYTGST SPAVTVLSDQ SMFAGITLSG QNSSPGLGNV  300
SSEAVSCVSD IWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177RRSRRRKQ
2172177SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.182290.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151003.20.0PREDICTED: basic leucine zipper 9
SwissprotQ9FUD31e-164BZIP9_ARATH; Basic leucine zipper 9
TrEMBLM4CZZ60.0M4CZZ6_BRARP; Uncharacterized protein
STRINGBra009793.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63702641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-143basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]