PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151043.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 236aa    MW: 26829.5 Da    PI: 9.6433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151043.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-185199254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  XP_009151043.1 51 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 99
                    69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.11E-3550110No hitNo description
SMARTSM003808.1E-4151114IPR001471AP2/ERF domain
PROSITE profilePS5103220.71951108IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2051110IPR016177DNA-binding domain
PfamPF008471.0E-1051100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3351108IPR001471AP2/ERF domain
PRINTSPR003671.4E-105263IPR001471AP2/ERF domain
PRINTSPR003671.4E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKPTVLKATL HSSNNTFHHF PLLHFPTNTL IDKHTGTYLT PNILMARPQQ RFRGVRQRHW  60
GSWVSEIRHP LLKTRIWLGT FETAEDAARA YDEAARLMCG PRARTNFPYN PNAVPSSSSK  120
LLSATLTAKL HKCYMASLHL TKQTQTQSQA QAQNPRLRSL SLPDTDSVMN MTAGGNHYDR  180
GGGVTETMKE IKWEDGNANL QQSFKPLEED HIEQMIEELR HYGSIEFCSV LPTRSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1750113468ATERF1
3gcc_A3e-1750113468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456591e-100AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
GenBankAY0596641e-100AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151043.11e-180PREDICTED: ethylene-responsive transcription factor ERF003
RefseqXP_013647231.11e-180ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-98ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A397Z8I31e-143A0A397Z8I3_BRACM; Uncharacterized protein
TrEMBLM4D0261e-143M4D026_BRARP; Uncharacterized protein
STRINGBra009824.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-77ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]