PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151053.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 252aa    MW: 26657.4 Da    PI: 4.3931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013148169223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     kC+ Cg+sF ++     H+r+H
  XP_009151053.1 148 KCNVCGRSFLSWKAVFGHLRSH 169
                     7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-5144171No hitNo description
PROSITE profilePS501578.663147169IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSDPEKTKVN TEEKINENSD ESDYLWSDEE EEGEMREIVL ALPALSLSDP DEITRQKAVA  60
AADLLVAAAQ EAAVTKGNMD QQGFGGSGET AKKEKSRRPR TVMLDDLADV AGASGSKATV  120
SAGEEEPAKK PKKKGSPKLI NPPEGPPKCN VCGRSFLSWK AVFGHLRSHR DRGYSGFLPP  180
PTFNAAVKAS GGDVAASCGD GGLGLGTGGL NIDLNVDPID EVEECGTGST PKFDLNRSPP  240
QDEEDAKEDK AE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.188330.0bud| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151053.10.0PREDICTED: uncharacterized protein LOC103874360
TrEMBLM4D5740.0M4D574_BRARP; Uncharacterized protein
STRINGBra011631.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.14e-53C2H2 family protein