PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009151152.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 203aa MW: 22776.2 Da PI: 8.8966

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009151152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.3	4.9e-19	10	54	2	46
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 ien++ r++tf kR+ gi+KKA ELS+LCd+ +av + s+ + + XP_009151152.1 10 YIENETSRKTTFRKRKGGIMKKALELSTLCDVPIAVFVQSEYNSV 54 59**************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.83E-23	1	86	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-25	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.353	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.69E-24	2	86	No hit	No description
PRINTS	PR00404	1.8E-13	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-17	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-13	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-13	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTRNRVKMAY IENETSRKTT FRKRKGGIMK KALELSTLCD VPIAVFVQSE YNSVPEVFPP 60 SRQAMGNMLV KWEKLSLVEK TKKMMNQEQF IQQRITKATE SCKKVAKENK ELAMKEVMYD 120 CLRGDNAPCN LDEDELRDLG GVIDQYIKGL NRRIQVLMKD HASSSTSVVP DAAAAAAAVA 180 MPTAEMGSSS NVKDFDLNQT QSE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009151152.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151152.1	1e-151	PREDICTED: MADS-box transcription factor PHERES 2
Refseq	XP_013647266.1	1e-151	MADS-box transcription factor PHERES 2-like
TrEMBL	A0A397Z1M1	1e-150	A0A397Z1M1_BRACM; Uncharacterized protein
TrEMBL	M4D0B5	1e-150	M4D0B5_BRARP; Uncharacterized protein
STRING	Bra009913.1-P	1e-150	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	7e-54	M-type_MADS family protein