PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151175.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 284aa    MW: 31418.6 Da    PI: 4.9747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0001994116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k Fs+   L  H++ H
  XP_009151175.1  94 YTCQFCSKGFSTTQALGGHQNAH 116
                     9*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.78E-790122No hitNo description
Gene3DG3DSA:3.30.160.605.4E-492119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61494121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MENEVMSSAS SSSPQPETSK DTIVAVEESN EKATENNNNL SLVPSDQEVM SERRSENPSL  60
GSERGSENPS LGSGAVRTGT EMTMLYPSRS NKIYTCQFCS KGFSTTQALG GHQNAHKHDR  120
EWEKKRKEME EDFPGLSFLN RYIDKPHLLL GGYSEDALSN DNHLGITLES FKRRGSGGVY  180
PSFNSGVGPM DMNVAPRMAP TRFFTGNTFT DGSSSRGLGP RPTYAPMFPR NVPPFLRPRS  240
TNLPRNLYPQ GNRVGEKDNV VVIDDDDDEP DEDNPKSWGK DLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151175.10.0PREDICTED: uncharacterized protein LOC103874503
RefseqXP_013704283.10.0uncharacterized protein LOC106407995
TrEMBLA0A397Z8V70.0A0A397Z8V7_BRACM; Uncharacterized protein
TrEMBLM4D0D90.0M4D0D9_BRARP; Uncharacterized protein
STRINGBra009937.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-79C2H2 family protein