PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151478.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 185aa    MW: 20960.2 Da    PI: 4.5891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151478.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-191967355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a+  l+g
  XP_009151478.1 19 YRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAAIHLRG 67
                    9******9.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.6E-131867IPR001471AP2/ERF domain
PROSITE profilePS5103222.9061875IPR001471AP2/ERF domain
SMARTSM003802.9E-361881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311876IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-221976IPR016177DNA-binding domain
CDDcd000184.07E-221977No hitNo description
PRINTSPR003672.0E-101930IPR001471AP2/ERF domain
PRINTSPR003672.0E-104157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MENKNVGQLE QFSVDQVSYR GVRQRKWGKW VSEIREPGKK TRIWLGSYET AEMAAAAYDV  60
AAIHLRGRGT HVNFPELADS FPQPQSSSSE HIQAAAQEAA LLFKPGVSST EADLGSGQGH  120
SRVGLSPDQI QAINEFPLDS PRRGWMQDLE VDDYEELYGR IFGQCDRDEY FEMQQLQSIW  180
DLNCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-171980668ATERF1
3gcc_A8e-171980668ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.287670.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151478.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151478.11e-137PREDICTED: ethylene-responsive transcription factor ERF022-like
RefseqXP_013639902.11e-137ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ289e-94ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A397ZEP71e-136A0A397ZEP7_BRACM; Uncharacterized protein
TrEMBLM4D1611e-136M4D161_BRARP; Uncharacterized protein
STRINGBra010210.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.19e-95ERF family protein