PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151630.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 401aa    MW: 44851.6 Da    PI: 5.7278
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08336390146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++
   XP_009151630.1 336 RLFWTPEEEEMLKVGVEKFSAEakknmPWRKILEMGAevfhETRTPADLKDKWRN 390
                      678*****************************97655*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.08E-686143IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-487141IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500907.793331392IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-9331392IPR009057Homeodomain-like
SuperFamilySSF466891.05E-9334391IPR009057Homeodomain-like
SMARTSM007170.0017335394IPR001005SANT/Myb domain
PfamPF002491.1E-5339390IPR001005SANT/Myb domain
CDDcd116602.74E-10339390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRSKSFAVRS RPHRAPRNSL DPYPSPAPLP GEANERFASG VNTTHCVSGD AERVPDTFDE  60
RDVPSKKRHC LGTSETTRGG GGGGGSNLEA CIVCDILDEG VSRCSGTGCI LWFHGECLNP  120
DLSSSSSEDL AKTYCPYCWF RVLMMKHESV RKKGVVAEKE VSKCLSKDHS VDGTDVVRDQ  180
ELGGEKGVCS SEKEQLQVEK DSDRSREEEV PLTEGIDYQH QEDTEKFQDA EEDKDDEETT  240
KDQTTGGAGG KGDVSGEEQD QSQQNEKPRR RRRQLILSCS EISSDESTNE RHGEGVTEQI  300
TGEMKNQQRK HSATTQVAKS KTVRDMSSLK TDQRKRLFWT PEEEEMLKVG VEKFSAEAKK  360
NMPWRKILEM GAEVFHETRT PADLKDKWRN RMGVRSAKKA N
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937353e-65AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178773e-65AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195433e-65AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151630.10.0PREDICTED: uncharacterized protein LOC103874944
RefseqXP_013644287.20.0uncharacterized protein LOC106348980
TrEMBLA0A397Z3020.0A0A397Z302_BRACM; Uncharacterized protein
STRINGBra037494.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-06MYB_related family protein