PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009151725.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 509aa    MW: 58885.8 Da    PI: 5.3834
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009151725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.96.3e-20208261155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W   L  +F++av++L G++  +Pk+ile m+v +Lt+e+v+SHLQk+R+
  XP_009151725.1 208 KRRVVWDDYLNGKFLDAVNSL-GNNDVVPKKILERMNVSSLTRENVASHLQKFRM 261
                     689******************.9999****************************7 PP
2Response_reg43.81.4e-15361431108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++++ +++l++ le+ +y ev+++ + e a  ll++++  +D+ ++     + + ++l++eir+e  ++pii+ ++ ++ e +++ ++ G
  XP_009151725.1  36 VLLFDEDRIYLQILEKHLEEFQY-EVTTCHEEERATYLLCNHRnmFDIAIIEAHNLEGKIFRLISEIRSEI-DIPIIITSQDDSRESVTKWMRNG 128
                     8999*******************.***************99999********9999999*********988.*********************** PP

                     ESEEEESS--HHHHH CS
    Response_reg  94 akdflsKpfdpeelv 108
                     a d+l Kp+ pe+l+
  XP_009151725.1 129 ACDYLIKPIRPEDLR 143
                     *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.42E-2032155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.0E-2233174No hitNo description
SMARTSM004485.0E-534146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.87735150IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-1036144IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.47E-1137143No hitNo description
SuperFamilySSF466892.33E-14206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-20206265IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-21208261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MLQKWKPSGD ESGGPDRDLP NSRDMFSGNF PEGLRVLLFD EDRIYLQILE KHLEEFQYEV  60
TTCHEEERAT YLLCNHRNMF DIAIIEAHNL EGKIFRLISE IRSEIDIPII ITSQDDSRES  120
VTKWMRNGAC DYLIKPIRPE DLRLIYKYLV KKMELRGITV AEEAEEKAAA EKSSSVGDST  180
IRSPNRRKRN MLQTDEDPDH NRDSATKKRR VVWDDYLNGK FLDAVNSLGN NDVVPKKILE  240
RMNVSSLTRE NVASHLQKFR MGLKKKNDKN KSDERSLPLI TPQERGMSSG EISNELYRGL  300
NVQFPTHHVN NIPQPSYFQQ HNTNLNLMTQ RVSSPPGNHY DRLSVASSSK NLVTTHQHHT  360
SHQISEFPCN DQSIEERLVY YEEDEDDGVR NLITDWFTQI PDQINLFPLE ESVIATTMRF  420
NDDQVSANQQ EPMYVHEPSM MHIPSLPSSL THNPFLDQKE NIQLVDLPRQ QLFHEQQHAN  480
LANENRFPET NPGTGSARMD KMDQDTDQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16204265162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009151725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325780.0AC232578.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS013H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151725.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLA0A3P5YKQ30.0A0A3P5YKQ3_BRACM; Uncharacterized protein
TrEMBLM4F8L50.0M4F8L5_BRARP; Uncharacterized protein
STRINGBra037427.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.12e-74pseudo-response regulator 4