PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009151730.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 128aa MW: 14429.2 Da PI: 6.0047

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009151730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.2	3.4e-14	18	93	13	95
TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ ++++ f+ +h +gk +++kt +l++ s ++Wev +++ lt+GWk+F a++L+ gD v+Fk++g++ f +v+ XP_009151730.1 18 HSGVTISLAFFLKHiEGK-TNQKTWKLRSdASDQTWEVIQ--EGRT----LTGGWKDFTTAHDLRIGDLVIFKHEGDMVF--HVT 93 456899999999996555.67789999997889***99..5554....*********************9999998..766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.0E-19	3	100	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.14E-19	4	104	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.71E-15	7	95	No hit	No description
SMART	SM01019	3.8E-17	9	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.3E-9	20	90	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.644	43	98	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MANPHEPHFF KPLLPGCHSG VTISLAFFLK HIEGKTNQKT WKLRSDASDQ TWEVIQEGRT 60 LTGGWKDFTT AHDLRIGDLV IFKHEGDMVF HVTPFGPSCC EIQYTHPHII KEEADAGDAD 120 DNEISKSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009151730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189464	1e-160	AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009151730.1	1e-92	PREDICTED: B3 domain-containing protein REM9-like
Swissprot	O23076	1e-42	REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBL	M4F8U5	1e-91	M4F8U5_BRARP; Uncharacterized protein
STRING	Bra037507.1-P	2e-92	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	3e-45	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]