PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009152034.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 258aa    MW: 28572.5 Da    PI: 6.0368
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009152034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.3e-2196156257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + + +ps++++++++++l    +++e++V++WFqNrRa+ k+
  XP_009152034.1  96 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQISEQNVYNWFQNRRARSKR 156
                     89*****************99**************************************97 PP
2Wus_type_Homeobox103.61.3e-3395158265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
     XP_009152034.1  95 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQISEQNVYNWFQNRRARSKRKQ 158
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1792159IPR009057Homeodomain-like
PROSITE profilePS5007114.93392157IPR001356Homeobox domain
SMARTSM003894.3E-1494161IPR001356Homeobox domain
SuperFamilySSF466891.24E-1795158IPR009057Homeodomain-like
CDDcd000861.07E-1296158No hitNo description
PfamPF000467.8E-1996156IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMEWDNNHQQ QPNNHNSSNL QGIDVSGGGS SSGGMYVKVM TDEQLETLRK QIAIYATICE  60
RLVEMHKTLT SQQDLAGGRL GGLYVDPTIG HKMTARQRWT PTPVQLQILE RIFDQGTGTP  120
SKQKIKDITE ELSQHGQISE QNVYNWFQNR RARSKRKQHG GGGGGGVGSS NNNNGESEVE  180
TETETLNGKR KMPESLRVLP DGNNGIGTTS TTSPRPEDLC FQSPEMSSDL HLLGVLSNPR  240
DDHSYNLYDH VEEYGMSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.245830.0leaf| root| silique
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009152034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0482681e-112AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds.
GenBankAY2514041e-112AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds.
GenBankBT0005381e-112BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009152034.10.0PREDICTED: WUSCHEL-related homeobox 13-like
SwissprotO817881e-133WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A398AP040.0A0A398AP04_BRACM; Uncharacterized protein
TrEMBLM4D5660.0M4D566_BRARP; Uncharacterized protein
STRINGBra011623.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-119WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]