PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009152101.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 318aa    MW: 35228.6 Da    PI: 4.7929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009152101.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.7e-14119166152
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                     ++  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+   +++
  XP_009152101.1 119 TKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAADAYATKKLE 166
                     5789*****9.**********72....36******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-9119161IPR001471AP2/ERF domain
CDDcd000186.60E-18119160No hitNo description
PROSITE profilePS5103218.044120179IPR001471AP2/ERF domain
SMARTSM003805.7E-13120174IPR001471AP2/ERF domain
PRINTSPR003672.4E-6121132IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-14122167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.8E-19123167IPR001471AP2/ERF domain
PRINTSPR003672.4E-6143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAEPKKRSSL HATKPSKKPK KKPFQLNRLP GLSEDLKTMR KIRFVVNDPY ATDYSSGEED  60
VEMTRRRKRY VCEIDRPFSQ ATAQAESESS YVQESRNNGG SKKALSGKAS QVVGRSSVTK  120
PVGVRQRKWG KWAAEIRHPI TKTRTWLGTY ETLEQAADAY ATKKLEFDAL AAASSAAAPC  180
DSTASNETVS MVSNVEAVSS IDRDMKVTDS KKPSFDFNFA DLQIPDMGCF IDESLIPNAC  240
ELDFFLTEEK DDQLLDDYCG IDDMNIIGLE CDGPSELPDY DFSDVEIDLG LIGTTIDKFA  300
FVDHLATSTT TPLNIACP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.32340.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009152101.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895730.0AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009152101.10.0PREDICTED: ethylene-responsive transcription factor ERF119
SwissprotQ9LUA21e-153EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLM4E8R40.0M4E8R4_BRARP; Uncharacterized protein
STRINGBra025170.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-145ERF family protein