PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009152112.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 378aa    MW: 42274.8 Da    PI: 5.8269
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009152112.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.7e-31220275156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W++eLH rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  XP_009152112.1 220 KQRRCWSHELHIRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 275
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.268217277IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-27218278IPR009057Homeodomain-like
SuperFamilySSF466895.38E-17218278IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-27220275IPR006447Myb domain, plants
PfamPF002491.2E-6222273IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MIKSLSNMKN YNEKREKCCE YIEALEEERR KINVFQRELP LCLELVTQAI EAYKKEISGT  60
TTDTLYGQPE CSEQTTGECG PVLDLFLPIK QSSASTDEEE EEEEVDDVEH ESHDTGIDFV  120
DKNMKSEWLK SVQLWNQPEA VPVSKSERSQ QETQTLVEPI KENDNGAGSH QPPCYESNEK  180
NDYIISLATT SSGSGRQQTE AERDGSGGSG GSSSRRGQRK QRRCWSHELH IRFLNALKQL  240
GGPHVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS QTIPNNRDSQ TQHFVVVGGI  300
WVPQASHSKA NAVASRETTT GIYGPMASPL PSEWPSHSNF GGEISEEISR CSDKGIVRCS  360
SPAMSSSTRT KTKDAKMS
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009152112.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009152112.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9LS001e-177HHO1_ARATH; Transcription factor HHO1
TrEMBLM4E8Q50.0M4E8Q5_BRARP; Uncharacterized protein
STRINGBra025161.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.11e-173G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]