PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009586602.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 873aa    MW: 97503 Da    PI: 8.4049
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009586602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.4e-06244260420
        zf-NF-X1   4 HkCqklCHeGpCppCpq 20 
                     H+C ++CHeG+CppC++
  XP_009586602.1 244 HRCTETCHEGDCPPCKA 260
                     ***************95 PP
2zf-NF-X118.73.7e-06294313120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+HkC++ CHeG+C+ Cp+
  XP_009586602.1 294 CGRHKCERGCHEGECGDCPL 313
                     ******************95 PP
3zf-NF-X120.31.2e-06401420120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C+++C+ G+CppC++
  XP_009586602.1 401 CGRHACKRKCCDGDCPPCSE 420
                     ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.96E-579150No hitNo description
PROSITE patternPS01359080143IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.13E-6177225No hitNo description
SMARTSM004380.072189207IPR000967Zinc finger, NF-X1-type
PfamPF014220.071189206IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-7231279No hitNo description
SMARTSM004385.5E-4241260IPR000967Zinc finger, NF-X1-type
PfamPF014220.0013243259IPR000967Zinc finger, NF-X1-type
CDDcd060081.42E-9284327No hitNo description
SMARTSM004380.001294313IPR000967Zinc finger, NF-X1-type
PfamPF014228.9E-4294312IPR000967Zinc finger, NF-X1-type
CDDcd060082.22E-9338387No hitNo description
SMARTSM004380.19348368IPR000967Zinc finger, NF-X1-type
PfamPF014220.0025348367IPR000967Zinc finger, NF-X1-type
CDDcd060082.57E-8391439No hitNo description
SMARTSM004380.0036401420IPR000967Zinc finger, NF-X1-type
PfamPF014224.3E-4401419IPR000967Zinc finger, NF-X1-type
CDDcd060088.47E-10418466No hitNo description
SMARTSM004380.0043428447IPR000967Zinc finger, NF-X1-type
PfamPF014220.0086428446IPR000967Zinc finger, NF-X1-type
SMARTSM00438130485506IPR000967Zinc finger, NF-X1-type
PfamPF014228.3495505IPR000967Zinc finger, NF-X1-type
SMARTSM0043856514559IPR000967Zinc finger, NF-X1-type
PfamPF0142228514523IPR000967Zinc finger, NF-X1-type
SMARTSM004387.7596628IPR000967Zinc finger, NF-X1-type
PfamPF014220.068596606IPR000967Zinc finger, NF-X1-type
SMARTSM004380.07638656IPR000967Zinc finger, NF-X1-type
PfamPF014222.6640655IPR000967Zinc finger, NF-X1-type
SMARTSM004386701722IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MTSWSATVAP PLSPPSSDSD SDSATTSDSH HHRHSDLSST IFKSYLEHSS GDHNNQQQQQ  60
HDLIKIQSFL TSSRSGALSC LICLERIRPS DPTWSCSSGC FAVFHLHCIQ SWAVQCSNLA  120
AARAVTRAAT PNDSSLLWHC PKCRVEYSKS QIPKNYYCFC GKLPDPPHDP WVLPHSCNEI  180
CGRPLKYNCG HHCLLLCHPG PCPSCPKLVK SRCFCGAVED VKRCGFKNFS CNGVCKKLLD  240
CKTHRCTETC HEGDCPPCKA KGIYKCQCGK LEMKRECFDR VFRCENPCDK LLGCGRHKCE  300
RGCHEGECGD CPLQGKRTCP CGKRVYEGIA CDAPVSVCGA TCGKMLSCGF HRCPERCHKG  360
PCIETCRVVV TKSCRCGSYR KQVPCYQDLT CERKCQKMRD CGRHACKRKC CDGDCPPCSE  420
MCDRKLRCRN HKCPAPCHRG ACAPCPVMVT ISCLCGETHF EVPCGAEAEQ KPPKCRKPCC  480
VDRLCRHASN CKPHRCHYGA CPPCRLLCDE EYPCGHKCEL RCHGPTQPPL PEFTLKPKKR  540
RPNNQTEPTS GSSCPPCPQL VWRSCLGNHV GAERMMVCSD RTVFSCDNLC GNPLPCGNHY  600
CTKVCHALVS STKLYGSRRP ESCEECTLPC QQERKPTCPH PCPLRCHPGE CPPCKALIKR  660
SCHCGSMVHV FECIYYNSLS AKEQLTVRSC GGPCHRKLPN CTHLCPETCH PGECPSPDQC  720
SKKVTARCGC QTLKKELVCK DVQAAYRSNG TDPKDVSRNQ YGLGILPCNS DCRSKVKAAE  780
GELQHRKLKA PEEKEPETKD NVTKRRRRKG RVLEDKKTSI LQRIIAGIRR FLLFVIIIIA  840
LIASVYLGYK GLLWLSDWMN EAEIKRQRRY SRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1534540LKPKKRR
2803808KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6782980.0AY678298.1 Lycopersicon esculentum clone 56B23 chromosome 6, genomic sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586602.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A314LBA50.0A0A314LBA5_NICAT; Nf-x1-type zinc finger protein nfxl2
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors