PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009586653.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 224aa    MW: 25850.1 Da    PI: 8.2834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009586653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.34.1e-25113174159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +dDg++WrKYGqK++ ++++pr+Y+rCt++   gC++ k+v+r +e+p ++ +tY g+H+++
  XP_009586653.1 113 VDDGHAWRKYGQKHILNAKYPRNYFRCTHKfdqGCEANKQVQRIQENPPLFRVTYYGHHTCK 174
                     59***************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-2799174IPR003657WRKY domain
PROSITE profilePS5081120.518108171IPR003657WRKY domain
SuperFamilySSF1182902.22E-25109175IPR003657WRKY domain
SMARTSM007744.9E-38113175IPR003657WRKY domain
PfamPF031068.0E-25114174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MESENYTQSD LEKVTEKLNR GRELTRRLRE MIKKPEADAG DVLTEDLVGK IMSSFCETLS  60
ILRSNECSEV SQIVKSTEDS SGSCKTSSLK DRRGRYKRRK TLETTIKETS TLVDDGHAWR  120
KYGQKHILNA KYPRNYFRCT HKFDQGCEAN KQVQRIQENP PLFRVTYYGH HTCKTFPKVS  180
QMICDSPTDE DSSVLLNFNS TNNHHHFLDM MVGTVGFADL SFQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-24113174869OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1937710.0AF193771.1 Nicotiana tabacum DNA-binding protein 4 (WRKY4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586653.11e-170PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A1S4BVN41e-166A0A1S4BVN4_TOBAC; probable WRKY transcription factor 70
STRINGXP_009586653.11e-169(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-41WRKY DNA-binding protein 70