PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009586781.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 217aa MW: 24112.2 Da PI: 5.6821

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.3	1.2e-15	58	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + + +Wv+e r p +k+ r++lg++ ae+Aa+a++ a+ +l+g XP_009586781.1 58 PVYRGVRKRN-SDKWVCEMRLP---NKKSRIWLGTYPIAEMAARAHDVAAIALRG 108 68***888.7*****8...347***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.9E-11	58	108	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-26	59	122	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.75E-19	59	118	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.653	59	116	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.9E-29	59	118	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-7	60	71	IPR001471	AP2/ERF domain
CDD	cd00018	6.55E-28	60	118	No hit	No description
PRINTS	PR00367	6.9E-7	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDIFRSYYSD SLTESSSLSD NSSSPCNRAN LSDEEVLLAS NNPKKRAGRK KFHETRHPVY 60 RGVRKRNSDK WVCEMRLPNK KSRIWLGTYP IAEMAARAHD VAAIALRGRS ACLNFADSVW 120 KLPIPASTDA KDIQRAAAEA AEAFRPSESE AISGESCAGT TPETLENDKF FMDEEALFCM 180 PGLLASMAEG LMLPPPHFVD VGDYVEAADM HLWSYTI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU727156	0.0	EU727156.1 Nicotiana tabacum DREB2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586780.1	1e-161	PREDICTED: dehydration-responsive element-binding protein 1D-like
Refseq	XP_016469077.1	1e-161	PREDICTED: dehydration-responsive element-binding protein 1D-like
Swissprot	Q9FJ93	4e-69	DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBL	A0A1S3ZXF1	1e-160	A0A1S3ZXF1_TOBAC; dehydration-responsive element-binding protein 1D-like
STRING	XP_009586781.1	1e-161	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25480.1	6e-64	dehydration response element B1A

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guttikonda SK, et al. Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean. Mol. Biol. Rep., 2014. 41(12): p. 7995-8008 [PMID:25192890] Zhang T, et al. Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 94: p. 153-64 [PMID:26093308] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]