PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009586881.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 184aa MW: 21188 Da PI: 9.7499

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009586881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	121	164	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 +aep+rCrR+DGKkWRCsr+v++++k+CE+H+hrgr+r rk++e XP_009586881.1 121 EAEPRRCRRSDGKKWRCSRTVVQNQKYCEKHMHRGRQRPRKHVE 164 58****************************************97 PP
2	QLQ	42.2	2.4e-15	60	94	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Q q+L++Q +yKy+ a+ PvP++L+ +i+k XP_009586881.1 60 FTFLQRQELEQQFFIYKYIEAGIPVPSHLIIPIFK 94 9999*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.4E-5	58	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.173	59	94	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-11	60	93	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.307	121	165	IPR014977	WRC domain
Pfam	PF08879	3.2E-19	122	164	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MDLKIPPPNN IASKKDYYDV SNGVEGKCST ELGLNLELSQ HGDNHEYSSY SKFNTSGYGF 60 TFLQRQELEQ QFFIYKYIEA GIPVPSHLII PIFKSITCSV KGLQYVMGYG HLGWELKSNM 120 EAEPRRCRRS DGKKWRCSRT VVQNQKYCEK HMHRGRQRPR KHVELTSSNL QLSTSTIKSS 180 SRSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009586881.1	1e-137	PREDICTED: growth-regulating factor 10-like
Swissprot	Q6AWX7	2e-39	GRF12_ORYSJ; Growth-regulating factor 12
Swissprot	Q6EPP9	2e-39	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	A0A2G3AE89	4e-75	A0A2G3AE89_CAPAN; Growth-regulating factor 10
STRING	XP_009586881.1	1e-136	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14471	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-26	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]