PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009587116.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 355aa MW: 38681.7 Da PI: 6.9085

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009587116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	219.2	9.1e-68	125	278	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklss 93 g++sCqdCGnqakkdC+h+RCRtCCksrg++C+thvkstWvpaakrrerqqql+a+++++ +++ ++++ k kr+ + ++sal ++ l+s XP_009587116.1 125 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGLQCQTHVKSTWVPAAKRRERQQQLSALQQQERHDQlhldHNNNYKPKRKREDPSASALVCAPLPS 219 5789***************************************************99999888888644444444444456667777777777 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ + le+ ++P++vss+a+f+c+++ss++d+e++laYq+av+igGhvfkGiLydqG+e+ XP_009587116.1 220 NT--NGLEVGKFPAKVSSAALFQCIQMSSIEDAEDQLAYQAAVNIGGHVFKGILYDQGPES 278 65..569999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-64	127	277	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.4E-27	129	171	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.4E-25	228	276	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MANFFSLDGR GSSSQDQQQE ISSSHHRTVN PVPTEISAES WFLYRNDHNQ EMPTYKGFEL 60 WQSTTPQHQP EQQQQQQFRH PIYPLQDLYS TAVGLGVGPN QSGFDIFAGD HEASRSGFVM 120 MRSGGGGISC QDCGNQAKKD CQHMRCRTCC KSRGLQCQTH VKSTWVPAAK RRERQQQLSA 180 LQQQERHDQL HLDHNNNYKP KRKREDPSAS ALVCAPLPSN TNGLEVGKFP AKVSSAALFQ 240 CIQMSSIEDA EDQLAYQAAV NIGGHVFKGI LYDQGPESQY NNMAAAGDTS SGGGSGSAGI 300 PHHHNSAATA IASGGAAAAA EASNFLDPSL FPASLSTFMS TDYKQIWSVS NTSVL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MANFFSLDGR GSSSQDQQQE ISSSHHRTVN PVPTEISAES WFLYRNDHNQ EMPTYKGFEL  60
WQSTTPQHQP EQQQQQQFRH PIYPLQDLYS TAVGLGVGPN QSGFDIFAGD HEASRSGFVM  120
MRSGGGGISC QDCGNQAKKD CQHMRCRTCC KSRGLQCQTH VKSTWVPAAK RRERQQQLSA  180
LQQQERHDQL HLDHNNNYKP KRKREDPSAS ALVCAPLPSN TNGLEVGKFP AKVSSAALFQ  240
CIQMSSIEDA EDQLAYQAAV NIGGHVFKGI LYDQGPESQY NNMAAAGDTS SGGGSGSAGI  300
PHHHNSAATA IASGGAAAAA EASNFLDPSL FPASLSTFMS TDYKQIWSVS NTSVL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499494.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1
Refseq	XP_018622424.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-152	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4CEW0	0.0	A0A1S4CEW0_TOBAC; protein SHI RELATED SEQUENCE 1
STRING	XP_009587116.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	5e-61	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]