PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587360.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 158aa    MW: 17660.6 Da    PI: 6.9596
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.75.3e-09139158221
                     --SS-EEEEEEE--TT-SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefp 21 
                     +Dg++WrKYGqKe+ gs+fp
  XP_009587360.1 139 EDGFTWRKYGQKEILGSRFP 158
                     7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-6136158IPR003657WRKY domain
SuperFamilySSF1182904.18E-6137158IPR003657WRKY domain
PROSITE profilePS508118.869139158IPR003657WRKY domain
PfamPF031062.0E-5139158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDETTATILY GCKLAKELEA NLQNWANQPQ FTLNKTEEIV AVFNNVKERL SYYHHQQQQA  60
LEFFHAAEML GERPATAAFA VHGLPPAQES DQMGVSDSSR GGGSSSSSSQ RQRRRTGDTD  120
RRTVSVAAPR MGNLELPPED GFTWRKYGQK EILGSRFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587360.21e-116PREDICTED: WRKY transcription factor 55
TrEMBLA0A1S3Y8X61e-110A0A1S3Y8X6_TOBAC; WRKY transcription factor 55-like
STRINGXP_009587360.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-12WRKY DNA-binding protein 55