PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009587736.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 503aa MW: 55178.4 Da PI: 5.5319

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009587736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	151	210	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s XP_009587736.1 151 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 210 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	140	208	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	153	209	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	155	209	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	157	193	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MRELKDPEIK LFGKKIALPE NIKMWPLTVS GEDPGEGNSG NASCGVKDSE TNIGSDCDGC 60 LEDEKVSSEE KDEENQEAEK DHISGELSET KSEEKDQNQM MEESEDPRLL SESDNNPKTP 120 NIDEDSPALK TSKTENDPND AYSQQKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH 180 FCKSCQRYWT AGGTMRNVPV GAGRRKNKNS ATHCHHITIP EVLQAARIDP PNGFHHPTFK 240 PNGTVLSFGP DSPLCESMAS VLNLTEKKVA NGIHNGFYGP ENKNSFRKAG ENGDDCCSGS 300 SVTTSTSMID GGTHRRNELA VPNVNGFAPP VPCIPSVPWP YPWNAAVPLP AIFPPGYPLP 360 FCPPPYWNCN MLGPWSIPWL TPPSPTENPK GSGSAPNSPL GKHSREGDLL KSNSPDEKEP 420 SEEKNSERSV LVPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSDKKDHTA 480 TTSPMLQANP AALSRSLSFQ ERA

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MRELKDPEIK LFGKKIALPE NIKMWPLTVS GEDPGEGNSG NASCGVKDSE TNIGSDCDGC  60
LEDEKVSSEE KDEENQEAEK DHISGELSET KSEEKDQNQM MEESEDPRLL SESDNNPKTP  120
NIDEDSPALK TSKTENDPND AYSQQKTLKK PDKILPCPRC NSMDTKFCYY NNYNVNQPRH  180
FCKSCQRYWT AGGTMRNVPV GAGRRKNKNS ATHCHHITIP EVLQAARIDP PNGFHHPTFK  240
PNGTVLSFGP DSPLCESMAS VLNLTEKKVA NGIHNGFYGP ENKNSFRKAG ENGDDCCSGS  300
SVTTSTSMID GGTHRRNELA VPNVNGFAPP VPCIPSVPWP YPWNAAVPLP AIFPPGYPLP  360
FCPPPYWNCN MLGPWSIPWL TPPSPTENPK GSGSAPNSPL GKHSREGDLL KSNSPDEKEP  420
SEEKNSERSV LVPKTLRIDD PDEAAKSSIW STLGIKYDSV SRGGLFKALQ PKSDKKDHTA  480
TTSPMLQANP AALSRSLSFQ ERA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587736.1	0.0	PREDICTED: cyclic dof factor 3
TrEMBL	A0A1S4CVZ9	0.0	A0A1S4CVZ9_TOBAC; cyclic dof factor 3-like
STRING	XP_009587736.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	6e-83	cycling DOF factor 3