PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009587848.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 481aa MW: 54338.9 Da PI: 7.8939

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009587848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3.2e-10	431	479	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+t E+e l +v+++G g+W++I t + Rt+ ++k++w+++ XP_009587848.1 431 KRWSTIEEETLRSGVQKYGVGNWRLIFDTNHeifEDRTPVDLKDKWRNL 479 69*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-11	425	479	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.298	425	481	IPR017930	Myb domain
SuperFamily	SSF46689	2.54E-14	427	480	IPR009057	Homeodomain-like
SMART	SM00717	0.0084	429	481	IPR001005	SANT/Myb domain
CDD	cd11660	2.40E-16	431	480	No hit	No description
Pfam	PF00249	1.1E-6	431	479	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MDMDISRWIL EFVLWKPLED TIFNALIGVL PLPNEDSRLK KALILRKIQS EISNGSVSEK 60 ILEFLEVMEE LYTQEGIESS EAMKAAYCAV AVDCTVRFLN NKSEKVNYFE AVKRIWKQRI 120 NKMEKVENVG VVSEELWKWR DEIEAALWED RRCENVIMRS KSISAVVAVK VFVTEAKERI 180 GPPFLEVVAE TLRRDDAVKA YLGLENKEER GERIESLSIA GQDLTCSNHD KEASKRNALR 240 RRKHVAFKRT RGTAPAGVCK GVKIADSAEP GVEASRVQED LLHTPKIDIA QEALKLSSLE 300 LRAGVKDPLP EALELAEALM SLGRDSSAQQ PAENENGRAP HLVVDSNGVV QANGGNEDDQ 360 IIGLQNAAPK PSLMVRNSTA HTFEWNDSID NLSEGSPSSG RRFTLPTPRR TKVSPLKKYG 420 FKKVTKRRKS KRWSTIEEET LRSGVQKYGV GNWRLIFDTN HEIFEDRTPV DLKDKWRNLT 480 S

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MDMDISRWIL EFVLWKPLED TIFNALIGVL PLPNEDSRLK KALILRKIQS EISNGSVSEK  60
ILEFLEVMEE LYTQEGIESS EAMKAAYCAV AVDCTVRFLN NKSEKVNYFE AVKRIWKQRI  120
NKMEKVENVG VVSEELWKWR DEIEAALWED RRCENVIMRS KSISAVVAVK VFVTEAKERI  180
GPPFLEVVAE TLRRDDAVKA YLGLENKEER GERIESLSIA GQDLTCSNHD KEASKRNALR  240
RRKHVAFKRT RGTAPAGVCK GVKIADSAEP GVEASRVQED LLHTPKIDIA QEALKLSSLE  300
LRAGVKDPLP EALELAEALM SLGRDSSAQQ PAENENGRAP HLVVDSNGVV QANGGNEDDQ  360
IIGLQNAAPK PSLMVRNSTA HTFEWNDSID NLSEGSPSSG RRFTLPTPRR TKVSPLKKYG  420
FKKVTKRRKS KRWSTIEEET LRSGVQKYGV GNWRLIFDTN HEIFEDRTPV DLKDKWRNLT  480
S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587849.1	0.0	PREDICTED: uncharacterized protein LOC104085504 isoform X1
Refseq	XP_009587850.1	0.0	PREDICTED: uncharacterized protein LOC104085504 isoform X1
TrEMBL	A0A1J6ISS5	0.0	A0A1J6ISS5_NICAT; Uncharacterized protein
STRING	XP_009587848.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3774	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06910.1	1e-15	TRF-like 7