PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009587871.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 217aa    MW: 24214 Da    PI: 7.6663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009587871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-1989138356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++ + +++ge
  XP_009587871.1  89 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFVTAEEAARAYDKKAVEFRGE 138
                     9*******.**********7.....337************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-2288147IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-3288146IPR001471AP2/ERF domain
PROSITE profilePS5103223.84188145IPR001471AP2/ERF domain
SMARTSM003805.3E-3688151IPR001471AP2/ERF domain
PRINTSPR003671.0E-1189100IPR001471AP2/ERF domain
PfamPF008473.2E-1289138IPR001471AP2/ERF domain
CDDcd000182.47E-3089147No hitNo description
PRINTSPR003671.0E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVSALRNVIS GADGRTDGEG AAQLLREIEN ASAATSASIL PRKSIVEPTA SATTYLACHI  60
GSTTSFHVKR ENLELQKGRK RRRNTKKEYR GVRQRPWGKW AAEIRDPHKA QRVWLGTFVT  120
AEEAARAYDK KAVEFRGEKA KTNFPISEYA TTVSTDHNNK LPMVVEDQLQ VQNGLYNGEV  180
KVEGDDNGES STQNGDDFWD TLEDDGLVKW ITKDMSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2187146464ATERF1
3gcc_A1e-2187146464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009587851.21e-157PREDICTED: uncharacterized protein LOC104085503
SwissprotO222593e-29ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A1S3XMC11e-143A0A1S3XMC1_TOBAC; ethylene-responsive transcription factor ERF071-like
STRINGXP_009587871.11e-161(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-31ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]