PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588286.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 235aa    MW: 26338.9 Da    PI: 9.0665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015107129123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C k Fs++  L  H++ H
  XP_009588286.1 107 YECHFCLKKFSNSRALGGHQNAH 129
                     99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-6104134No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4104133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.177107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDEAVYQKST NYNLLSTGRN GTDIICCKTS ASDKKLRIFG FELNPCLKDS ICSRSERHES  60
VSSFETFMDE RPKEKTSICM NSSGIVLPNP NENLRNLSVS AVMELKYECH FCLKKFSNSR  120
ALGGHQNAHR RERLKKKRMD LEAKRASSSM FYLNALIRNN GVMYPYSYVP TIVYGSSLIS  180
FSSVYHCQNG THSPCFTVAS SSGELYLQNS SFIAIQGGES RGRYPLSLVI VPSTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794591.11e-126PREDICTED: zinc finger protein 5-like
RefseqXP_016433875.11e-126PREDICTED: zinc finger protein 5-like
TrEMBLA0A1S3X1L21e-125A0A1S3X1L2_TOBAC; zinc finger protein 5-like
TrEMBLA0A1U7XY921e-125A0A1U7XY92_NICSY; zinc finger protein 5-like
STRINGXP_009588286.11e-174(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA619466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-11C2H2 family protein