PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009588379.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 218aa MW: 24588.8 Da PI: 9.723

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009588379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.6	9.9e-17	150	207	4	62
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++r rrk+kNRe+A rsR+RK+a++ eL +kv Le+eN++Lkke +el+k+ ++l se XP_009588379.1 150 DRRLRRKIKNRESAARSRARKQAYQNELVNKVSHLEEENMKLKKE-KELEKMLSELSSE 207 789****************************************76.8999999999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-13	146	204	No hit	No description
SMART	SM00338	1.1E-12	147	206	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	149	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.8E-14	150	207	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.27E-17	151	188	No hit	No description
SuperFamily	SSF57959	7.5E-11	151	197	No hit	No description
PROSITE pattern	PS00036	0	154	169	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
QFPVFFSLIH PLLLPDLNQF AGVDIDNTSP TTSFQHQASL TLAKAISSNT VDKVWRDIQQ 60 GQTVRNLDGM NDQERKPTLG ETTLEDYLVK AGLFSADASL GHTMSLDNPT AVQNFVPPIG 120 LSPSPSIDAL SDTPFSGRKR HATDIDKTLD RRLRRKIKNR ESAARSRARK QAYQNELVNK 180 VSHLEEENMK LKKEKELEKM LSELSSEPRY QLRRTSSI

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-121	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258990.1	1e-126	PREDICTED: LOW QUALITY PROTEIN: ABSCISIC ACID-INSENSITIVE 5-like protein 2, partial
Swissprot	Q9C5Q2	4e-40	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A314LG83	1e-85	A0A314LG83_NICAT; Abscisic acid-insensitive 5-like protein 2
STRING	XP_009588379.1	1e-160	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12596	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	7e-30	bZIP family protein

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]