PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589119.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 396aa    MW: 44694.5 Da    PI: 7.5184
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.8e-3391311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrF+Ptdeelvv++L++k++  +++  ++i+++++y ++PwdL+  k+ a  ++wyf+s+  +       ++r+t +gyW+  g d+++ls
  XP_009589119.1   9 LPPGFRFSPTDEELVVHFLQRKASLLPCHP-DIIPDLHLYPYDPWDLDaGKTMAVGNKWYFYSRITN-------ETRITGNGYWQPVGVDESILS 95 
                     79*************************999.99**************9546666789*****99765.......5799****************9 PP

             NAM  95 k.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                     + +++++g+kk   fy g + p+g+kt+W+m+eyrl
  XP_009589119.1  96 SsNHKVIGTKKYYGFYMGdEPPQGHKTNWLMQEYRL 131
                     877888**********996789************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-396136IPR003441NAC domain
PROSITE profilePS5100539.0779151IPR003441NAC domain
PfamPF023654.5E-2010131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGDNNNVNLP PGFRFSPTDE ELVVHFLQRK ASLLPCHPDI IPDLHLYPYD PWDLDAGKTM  60
AVGNKWYFYS RITNETRITG NGYWQPVGVD ESILSSSNHK VIGTKKYYGF YMGDEPPQGH  120
KTNWLMQEYR LSHSSASTSS SNRSSSRRST THSTNGASAS VGEEIPPTLK KLLEAWLIDT  180
LTSVLNKPAR DTTTENARTC TIQQADEHCN HLFPPMTYIT HNIIDSAGDN ALAAILKRME  240
EMENKNKALR DQIKEHQGRV DKIPSAPKLL LKRDVGRFVE QPYIDDAAPH AIPKTFKTMP  300
YLRIYDGTTD PEDHMTHYVT VVKVNDLTKE HVSSILLKKF GKTLTGGALT WYSQLPARST  360
ETFEEMADKF ITAHVGVKKA EARVNDIFSI KQSLRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-26614217156NAC domain-containing protein 19
3swm_B3e-26614217156NAC domain-containing protein 19
3swm_C3e-26614217156NAC domain-containing protein 19
3swm_D3e-26614217156NAC domain-containing protein 19
3swp_A3e-26614217156NAC domain-containing protein 19
3swp_B3e-26614217156NAC domain-containing protein 19
3swp_C3e-26614217156NAC domain-containing protein 19
3swp_D3e-26614217156NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009589119.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-53xylem NAC domain 1