PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009589174.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 839aa MW: 94998.4 Da PI: 5.6523

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009589174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50	6e-16	650	694	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 is ++l+++F +++ dAAk+Lgv ++LKr CR y I RWP+ k XP_009589174.1 650 GISRSVLEEQFGKKLSDAAKSLGVARSTLKRMCRDYDIYRWPRSK 694 6999**************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.843	635	720	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	636	686	IPR009057	Homeodomain-like
Pfam	PF02042	4.2E-13	651	694	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-17	752	837	No hit	No description
SMART	SM00666	2.4E-15	755	838	IPR000270	PB1 domain
PROSITE profile	PS51745	18.234	755	839	IPR000270	PB1 domain
Pfam	PF00564	7.8E-15	756	837	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.8E-15	757	836	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MWPRQRTTKR GDGINRWVFW TQHNGDELNQ VKSLFPVLRG YEFEPWKQPP VEMQGDSTQP 60 DTNGDSQLNR LTIKNLVELL DVQGTCLIQF WAPIRINSGK TFLTTADQPF AFNGKIHEGL 120 WAYRRVSLLT IASVDSTEID ETKRVHVHGR PARVFRSGMP EFSPHVRYYY MDEYPLRNFA 180 MCLGVGSYWT LPVFESSGDR CIGVLEYAFE ANVGLDLYST LDCLINNHRI LKTMGLALIP 240 SWLACSQEIQ EVWEQELAKV KEALEVTCKT HRLLFAQTWI SVLDSSRTQM LITSPPTKYW 300 SEEITSLEFL AVSDLHHVRI GQGLVGKVLS SKGSCFCRDI TQLSIDFYPF VPIARCAGFT 360 ACFAIFVRLN SACHMVLEFF LPNDETLDRN PQSFLSKLLA TIREQLPSFF LDSGPSLFVE 420 VIRTAPVDEL DSFEISQLQQ GVRSKGNEKM VLFDSLNQDS ADLGPSSSTD IGAHHMEIAK 480 DTPDNGEETV LPDSAHKQGV EEADAMDKEK SSVDFILATS FAVSEKKLQQ NLSTDKASLD 540 EKLDSFEIGH RQLPSMVQYD TINQIFGFDP SSSSDLEEII TADYGRDTQL NLQSKKRGES 600 TQPDLAHQQR VEEADVGDKR RHSVHVEENA NSHNCPEKHK RIKRIEKEYG ISRSVLEEQF 660 GKKLSDAAKS LGVARSTLKR MCRDYDIYRW PRSKSANDVC SLSENKPVKR VENQTGNSSR 720 EDLQLPHAGL SNGMDTTTTL TQRKKPTATF QSDNAMSVKV TYKDVTIRFP FSLSSGKIDL 780 ETEVEKRLKL VLIGSYSIKY EDEDNDWIAI TCDSDLEYGM HTLRSLGRTT MKMLVEPLN

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MWPRQRTTKR GDGINRWVFW TQHNGDELNQ VKSLFPVLRG YEFEPWKQPP VEMQGDSTQP  60
DTNGDSQLNR LTIKNLVELL DVQGTCLIQF WAPIRINSGK TFLTTADQPF AFNGKIHEGL  120
WAYRRVSLLT IASVDSTEID ETKRVHVHGR PARVFRSGMP EFSPHVRYYY MDEYPLRNFA  180
MCLGVGSYWT LPVFESSGDR CIGVLEYAFE ANVGLDLYST LDCLINNHRI LKTMGLALIP  240
SWLACSQEIQ EVWEQELAKV KEALEVTCKT HRLLFAQTWI SVLDSSRTQM LITSPPTKYW  300
SEEITSLEFL AVSDLHHVRI GQGLVGKVLS SKGSCFCRDI TQLSIDFYPF VPIARCAGFT  360
ACFAIFVRLN SACHMVLEFF LPNDETLDRN PQSFLSKLLA TIREQLPSFF LDSGPSLFVE  420
VIRTAPVDEL DSFEISQLQQ GVRSKGNEKM VLFDSLNQDS ADLGPSSSTD IGAHHMEIAK  480
DTPDNGEETV LPDSAHKQGV EEADAMDKEK SSVDFILATS FAVSEKKLQQ NLSTDKASLD  540
EKLDSFEIGH RQLPSMVQYD TINQIFGFDP SSSSDLEEII TADYGRDTQL NLQSKKRGES  600
TQPDLAHQQR VEEADVGDKR RHSVHVEENA NSHNCPEKHK RIKRIEKEYG ISRSVLEEQF  660
GKKLSDAAKS LGVARSTLKR MCRDYDIYRW PRSKSANDVC SLSENKPVKR VENQTGNSSR  720
EDLQLPHAGL SNGMDTTTTL TQRKKPTATF QSDNAMSVKV TYKDVTIRFP FSLSSGKIDL  780
ETEVEKRLKL VLIGSYSIKY EDEDNDWIAI TCDSDLEYGM HTLRSLGRTT MKMLVEPLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009589173.1	0.0	PREDICTED: protein NLP7-like isoform X1
TrEMBL	A0A1U7XB85	0.0	A0A1U7XB85_NICSY; protein NLP7-like isoform X2
STRING	XP_009589173.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-41	NIN like protein 7